Skip to content
nf-core CI

318 update for tes compliance #1025

Sign in to view logs

318 update for tes compliance

318 update for tes compliance #1025

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --download_method aspera 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-9a9a9677f4ce0035e7db385bc0d084c.nf` [deadly_goldstine] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[bb/471725] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[87/37e479] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[b2/fd9c63] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[db/451652] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[4f/3f8f98] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[73/77a17c] Submitted process > SRA:ASPERA_CLI (SRX6725035_SRR9984183)
[5f/e6cf8e] Submitted process > SRA:ASPERA_CLI (DRX026011_DRR028935)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[29/4867ac] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
[ac/c97879] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[b7/a0153b] Submitted process > SRA:ASPERA_CLI (ERX1234253_ERR1160846)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[b7/730b04] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[02/957d59] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[6c/608fd4] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
View more details on GitHub Actions