Skip to content
nf-core CI

318 update for tes compliance #1025

Sign in to view logs

318 update for tes compliance

318 update for tes compliance #1025

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline viralrecon 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-e98bf0373b6366d6dcbf2bff024f63cd.nf` [wise_rutherford] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[a1/80dc28] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[7a/6b4817] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[40/690419] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[c4/055903] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[aa/2091cf] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[96/6044c2] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[40/e1916f] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[79/ed9728] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[09/6bf28e] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[27/1e564d] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[9e/fbcbd5] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[50/ef09e3] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
[f0/b2a328] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
View more details on GitHub Actions