318 update for tes compliance #1021
GitHub Actions / JUnit Test Report
failed
Sep 16, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.Parameters: default
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b151883b2e0c06488c527e353081389d.nf` [disturbed_laplace] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[1f/2a69f7] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[89/550234] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[a0/fa6117] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[30/bb534f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[20/42a310] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[55/25504b] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[37/fb85df] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[aa/95e4d5] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[7e/266362] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[96/114fe7] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[f7/62b546] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[5e/94550b] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[19/d83f5a] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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