318 update for tes compliance #1021
GitHub Actions / JUnit Test Report
failed
Sep 16, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
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github-actions / JUnit Test Report
nf.Parameters: --download_method aspera
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-9a9a9677f4ce0035e7db385bc0d084c.nf` [mighty_allen] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[3b/d5e15a] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[42/f4e8fb] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[77/a1ccc2] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[41/5e344f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[a8/0ae52f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[ed/758d11] Submitted process > SRA:ASPERA_CLI (ERX1234253_ERR1160846)
[28/e36d41] Submitted process > SRA:ASPERA_CLI (SRX6725035_SRR9984183)
[6d/6c73df] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[f0/8579c9] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[35/9bedb8] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[b6/dfcc8f] Submitted process > SRA:ASPERA_CLI (DRX026011_DRR028935)
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
WARN: Process `SRA:ASPERA_CLI` publishDir path contains a variable with a null value
[c0/b86adf] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[ad/7c0477] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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