318 update for tes compliance #1021
GitHub Actions / JUnit Test Report
failed
Sep 16, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.Parameters: --nf_core_pipeline atacseq
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-b770e146303f25e478e00e5aed7bbe13.nf` [berserk_wescoff] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[0e/0fa01f] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[58/aab0ab] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[82/b447af] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[22/d4beb1] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[7c/c63f2f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[1d/bf6f0d] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
[f9/6eae4c] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[00/4c7b53] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[c7/279a86] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[98/5ffbf3] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[9e/93d915] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[d2/03ee04] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[0b/d17961] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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