Add capability to use RAP/HRRR MASSDEN as smoke IC/LBCs

parm/varmap_tables/GSDphys_smoke_var_map.txt

@@ -0,0 +1,28 @@
+dzdt                dzdt      set_to_fill   0         D
+delta_p             delp      skip          0         D
+sphum               sphum     intrp         1E-7      T
+liq_wat             liq_wat   intrp         0         T
+o3mr                o3mr      intrp         1E-7      T
+rainwat             rainwat   intrp         0         T
+ice_wat             ice_wat   intrp         0         T
+snowwat             snowwat   intrp         0         T
+graupel             graupel   intrp         0         T
+ice_nc              ice_nc    intrp         -1.0      T
+rain_nc             rain_nc   intrp         -1.0      T
+water_nc            water_nc  intrp         -1.0      T
+liq_aero            liq_aero  intrp         0         T
+ice_aero            ice_aero  intrp         0         T
+sgs_tke             sgs_tke   intrp         0         T
+vtype               vtype     skip          0         S
+sotype              stype     skip          0         S
+vfrac               vfrac     skip          0         S
+fricv               uustar    skip          0         S
+sfcr                zorl      set_to_fill   0.01      S
+soilw               smc       stop          0         S
+soilt               stc       stop          0         S
+cnwat               cnwat     set_to_fill   0.0       S
+icetk               icetk     set_to_fill   265.0     S
+weasd               weasd     set_to_fill   0.0       S
+snod                snod      set_to_fill   0.0       S
+tprcp               tprcp     set_to_fill   0.0       S
+massden             smoke     set_to_fill   1E-12     T	

parm/varmap_tables/GSDphys_var_map.txt

@@ -24,4 +24,4 @@ cnwat               cnwat     set_to_fill   0.0       S
 icetk               icetk     set_to_fill   265.0     S
 weasd               weasd     set_to_fill   0.0       S
 snod                snod      set_to_fill   0.0       S
-tprcp               tprcp     set_to_fill   0.0       S       	
+tprcp               tprcp     set_to_fill   0.0       S

reg_tests/chgres_cube/13km.conus.rap-smoke.grib2.sh

@@ -0,0 +1,103 @@
+#!/bin/bash
+
+#-----------------------------------------------------------------------------
+# Invoke chgres to create 13-km CONUS coldstart files using RAP-SMOKE GRIB2 data
+# as input. i.e., if one desires MASSDEN/SMOKE in the ICs/LBCS
+# The coldstart files are then compared to baseline files
+# using the 'nccmp' utility.  This script is run by the machine specific 
+# driver script.
+#-----------------------------------------------------------------------------
+
+set -x
+
+export DATA=$OUTDIR/13km_conus_rap-smoke_grib2
+rm -fr $DATA
+
+export CRES=778
+export KMRES=13km
+export FIXfv3=${HOMEreg}/fix/RRFS_CONUS_${KMRES}
+
+export COMIN=${HOMEreg}/input_data/rap.grib2
+
+export GRIB2_FILE_INPUT=1921221000900
+export VCOORD_FILE=${HOMEufs}/fix/am/global_hyblev.l64.txt
+export VARMAP_FILE=${HOMEufs}/parm/varmap_tables/GSDphys_smoke_var_map.txt
+export INPUT_TYPE='grib2'
+export CONVERT_NST=".false."
+export OROG_FILES_TARGET_GRID="C778_oro_data.tile7.nc"
+export REGIONAL=1
+export HALO_BLEND=0
+export HALO_BNDY=4 
+export CDATE=2019080100
+export EXTERNAL_MODEL="RAP"
+export NSOILL_OUT=9
+export TRACERS_TARGET='"NULL"'
+export TRACERS_INPUT='"NULL"'
+export SOTYP_FROM_CLIMO=.false.
+export VGTYP_FROM_CLIMO=.false.
+export VGFRC_FROM_CLIMO=.true.
+export MINMAX_VGFRC_FROM_CLIMO=.true.
+export TG3_FROM_SOIL=.true.
+export LAI_FROM_CLIMO=.true.
+export GEOGRID_FILE_INPUT=${HOMEufs}/fix/am/geo_em.d01.nc_RAPX
+
+export OMP_NUM_THREADS_CH=${OMP_NUM_THREADS:-1}
+
+NCCMP=${NCCMP:-$(which nccmp)}
+
+#-----------------------------------------------------------------------------
+# Invoke chgres program.
+#-----------------------------------------------------------------------------
+
+echo "Starting at: " `date`
+
+${HOMEufs}/ush/chgres_cube.sh
+
+iret=$?
+if [ $iret -ne 0 ]; then
+  set +x
+  echo "<<< 13-km CONUS RAP-SMOKE W/ GSD PHYSICS AND SFC FROM FILE GRIB2 TEST FAILED. <<<"
+  exit $iret
+fi
+
+echo "Ending at: " `date`
+
+#-----------------------------------------------------------------------------
+# Compare output from chgres to baseline set of data.
+#
+# orion's nccmp utility does not work with the netcdf
+# required to run ufs_utils.  So swap it.
+#-----------------------------------------------------------------------------
+
+machine=${machine:-NULL}
+if [ $machine == 'orion' ]; then
+  module unload netcdfp/4.7.4.release
+  module load netcdf/4.7.2
+fi
+
+cd $DATA
+
+test_failed=0
+for files in *.nc
+do
+  if [ -f $files ]; then
+    echo CHECK $files
+    $NCCMP -dmfqS $files $HOMEreg/baseline_data/13km_conus_rap-smoke_grib2/$files
+    iret=$?
+    if [ $iret -ne 0 ]; then
+      test_failed=1
+    fi
+  fi
+done
+
+set +x
+if [ $test_failed -ne 0 ]; then
+  echo "<<< 13-km CONUS RAP-SMOKE W/ GSD PHYSICS AND SFC FROM FILE GRIB2 TEST FAILED. >>>"
+  if [ "$UPDATE_BASELINE" = "TRUE" ]; then
+    $HOMEufs/reg_tests/update_baseline.sh $HOMEreg "13km_conus_rap-smoke_grib2" $commit_num
+  fi
+else
+  echo "<<< 13-km CONUS RAP-SMOKE W/ GSD PHYSICS AND SFC FROM FILE GRIB2 TEST PASSED. >>>"
+fi
+
+exit 0

reg_tests/chgres_cube/driver.hera.sh

@@ -187,14 +187,25 @@ export OMP_NUM_THREADS=1   # should match cpus-per-task
 TEST13=$(sbatch --parsable --ntasks-per-node=6 --nodes=1 -t 0:05:00 -A $PROJECT_CODE -q $QUEUE -J c96.gefs.grib2 \
       -o $LOG_FILE -e $LOG_FILE ./c96.gefs.grib2.sh)
 
+
+#-----------------------------------------------------------------------------
+# Initialize CONUS 13-KM USING RAP-SMOKE GRIB2 file WITH GSD PHYSICS .
+#-----------------------------------------------------------------------------
+LOG_FILE=consistency.log14
+export OMP_NUM_THREADS=1   # should match cpus-per-task
+TEST14=$(sbatch --parsable --ntasks-per-node=6 --nodes=1 -t 0:05:00 -A $PROJECT_CODE -q $QUEUE -J 13km.conus.rap-smoke.grib2.conus \
+      -o $LOG_FILE -e $LOG_FILE ./13km.conus.rap-smoke.grib2.sh)
+
+
+
 #-----------------------------------------------------------------------------
 # Create summary log.
 #-----------------------------------------------------------------------------
 
 LOG_FILE=consistency.log
 sbatch --nodes=1 -t 0:01:00 -A $PROJECT_CODE -J chgres_summary -o $LOG_FILE -e $LOG_FILE \
       --open-mode=append -q $QUEUE -d\
-     afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13 << EOF
+     afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13:$TEST14 << EOF
 #!/bin/bash
 grep -a '<<<' ${LOG_FILE}??  > summary.log
 EOF

reg_tests/chgres_cube/driver.hercules.sh

@@ -188,13 +188,22 @@ export OMP_NUM_THREADS=1  # needs to match cpus-per-task
 TEST13=$(sbatch --parsable --ntasks-per-node=6 --nodes=1 --mem=75G -t 0:05:00 -A $PROJECT_CODE -q $QUEUE -J c96.gefs.grib2 \
       --open-mode=append -o $LOG_FILE13 -e $LOG_FILE13 ./c96.gefs.grib2.sh)
 
+#-----------------------------------------------------------------------------
+# Initialize CONUS 13-KM USING RAP-SMOKE GRIB2 file WITH GSD PHYSICS.
+#-----------------------------------------------------------------------------
+
+LOG_FILE14=${LOG_FILE}14
+export OMP_NUM_THREADS=1   # should match cpus-per-task
+TEST14=$(sbatch --parsable --ntasks-per-node=12 --nodes=1 --mem=75G -t 0:10:00 -A $PROJECT_CODE -q $QUEUE -J 13km.conus.rap-smoke.grib2 \
+      --open-mode=append -o $LOG_FILE14 -e $LOG_FILE14 ./13km.conus.rap-smoke.grib2.sh)
+
 #-----------------------------------------------------------------------------
 # Create summary log.
 #-----------------------------------------------------------------------------
 
 sbatch --nodes=1 -t 0:01:00 -A $PROJECT_CODE -J chgres_summary -o $LOG_FILE -e $LOG_FILE \
        --open-mode=append -q $QUEUE \
-       -d afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13 << EOF
+       -d afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13:$TEST14 << EOF
 #!/bin/bash
 grep -a '<<<' ${LOG_FILE}*  > $SUM_FILE
 EOF

reg_tests/chgres_cube/driver.jet.sh

@@ -183,14 +183,23 @@ export OMP_NUM_THREADS=1
 TEST13=$(sbatch --parsable --partition=xjet --nodes=1 --ntasks-per-node=6 -t 0:05:00 -A $PROJECT_CODE -q $QUEUE -J c96.gefs.grib2 \
       --exclusive -o $LOG_FILE -e $LOG_FILE ./c96.gefs.grib2.sh)
 
+#-----------------------------------------------------------------------------
+# Initialize CONUS 13-KM USING RAP-SMOKE GRIB2 file WITH GSD PHYSICS .
+#-----------------------------------------------------------------------------
+
+LOG_FILE=consistency.log14
+export OMP_NUM_THREADS=1   # should match cpus-per-task
+TEST14=$(sbatch --parsable --partition=xjet --ntasks-per-node=6 --nodes=1 -t 0:05:00 -A $PROJECT_CODE -q $QUEUE -J 13km.conus.rap-smoke.grib2.conus \
+      --exclusive -o $LOG_FILE -e $LOG_FILE ./13km.conus.rap-smoke.grib2.sh)
+
 #-----------------------------------------------------------------------------
 # Create summary log.
 #-----------------------------------------------------------------------------
 
 LOG_FILE=consistency.log
 sbatch --partition=xjet --nodes=1  -t 0:01:00 -A $PROJECT_CODE -J chgres_summary -o $LOG_FILE -e $LOG_FILE \
        --open-mode=append -q $QUEUE -d\
-       afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13 << EOF
+       afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13:$TEST14 << EOF
 #!/bin/bash
 grep -a '<<<' $LOG_FILE*  > $SUM_FILE
 EOF

reg_tests/chgres_cube/driver.orion.sh

@@ -186,13 +186,22 @@ export OMP_NUM_THREADS=1  # needs to match cpus-per-task
 TEST13=$(sbatch --parsable --ntasks-per-node=6 --nodes=1 --mem=75G -t 0:05:00 -A $PROJECT_CODE -q $QUEUE -J c96.gefs.grib2 \
       --open-mode=append -o $LOG_FILE13 -e $LOG_FILE13 ./c96.gefs.grib2.sh)
 
+#-----------------------------------------------------------------------------
+# Initialize CONUS 13-KM USING RAP-SMOKE GRIB2 file WITH GSD PHYSICS.
+#-----------------------------------------------------------------------------
+
+LOG_FILE14=${LOG_FILE}14
+export OMP_NUM_THREADS=1   # should match cpus-per-task
+TEST14=$(sbatch --parsable --ntasks-per-node=12 --nodes=1 --mem=75G -t 0:10:00 -A $PROJECT_CODE -q $QUEUE -J 13km.conus.rap-smoke.grib2 \
+      --open-mode=append -o $LOG_FILE14 -e $LOG_FILE14 ./13km.conus.rap-smoke.grib2.sh)
+
 #-----------------------------------------------------------------------------
 # Create summary log.
 #-----------------------------------------------------------------------------
 
 sbatch --nodes=1 -t 0:01:00 -A $PROJECT_CODE -J chgres_summary -o $LOG_FILE -e $LOG_FILE \
        --open-mode=append -q $QUEUE \
-       -d afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13 << EOF
+       -d afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13:$TEST14 << EOF
 #!/bin/bash
 grep -a '<<<' ${LOG_FILE}*  > $SUM_FILE
 EOF

reg_tests/chgres_cube/driver.wcoss2.sh

@@ -184,14 +184,23 @@ export APRUN="mpiexec -n 6 -ppn 6 --cpu-bind core"
 TEST13=$(qsub -V -o $LOG_FILE -e $LOG_FILE -q $QUEUE -A $PROJECT_CODE -l walltime=00:05:00 \
         -N c96.gefs.grib2 -l select=1:ncpus=6:ompthreads=1:mem=15GB $PWD/c96.gefs.grib2.sh)
 
+#-----------------------------------------------------------------------------
+# Initialize CONUS 13-KM USING RAP-SMOKE GRIB2 file WITH GSD PHYSICS.
+#-----------------------------------------------------------------------------
+
+LOG_FILE=consistency.log14
+export APRUN="mpiexec -n 6 -ppn 6 --cpu-bind core"
+TEST14=$(qsub -V -o $LOG_FILE -e $LOG_FILE -q $QUEUE -A $PROJECT_CODE -l walltime=00:05:00 \
+        -N 13km.conus.rap-smoke.grib2.conus -l select=1:ncpus=6:ompthreads=1:mem=15GB $PWD/13km.conus.rap-smoke.grib2.sh)
+
 #-----------------------------------------------------------------------------
 # Create summary log.
 #-----------------------------------------------------------------------------
 
 LOG_FILE=consistency.log
 qsub -V -o ${LOG_FILE} -e ${LOG_FILE} -q $QUEUE -A $PROJECT_CODE -l walltime=00:01:00 \
         -N chgres_summary -l select=1:ncpus=1:mem=100MB \
-        -W depend=afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13 << EOF
+        -W depend=afterok:$TEST1:$TEST2:$TEST3:$TEST4:$TEST5:$TEST6:$TEST7:$TEST8:$TEST9:$TEST10:$TEST11:$TEST12:$TEST13:$TEST14 << EOF
 #!/bin/bash
 cd ${this_dir}
 grep -a '<<<' ${LOG_FILE}?? | grep -v echo > $SUM_FILE