Merge pull request #117 from phac-nml/doc/installation

Doc/installation
phac-nml · Feb 22, 2020 · 80173a4 · 80173a4
2 parents 820191c + 1a3937b
commit 80173a4
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diff --git a/.travis.yml b/.travis.yml
@@ -18,6 +18,7 @@ install:
   - conda info -a
   - conda create -c bioconda -c conda-forge -q -y -n test-environment python=$TRAVIS_PYTHON_VERSION blast=2.7.1 git mlst
   - source activate test-environment
+  - pip install pandas==0.25.3
   - python setup.py install
   - staramr db build --dir staramr/databases/data $DATABASE_COMMITS
   - pip install mypy==0.600

diff --git a/README.md b/README.md
@@ -159,10 +159,10 @@ staramr db restore-default
 The easiest way to install `staramr` is through [Bioconda][bioconda].
 
 ```bash
-conda install -c bioconda staramr
+conda install -c bioconda staramr==0.7.1
 ```
 
-This will install the `staramr` Python package as well as all necessary dependencies and databases.  You can now run:
+This will install the `staramr` Python package at version `0.7.1` (replace with whichever version you wish to install). Bioconda will install all necessary dependencies and databases. Once this is complete you can run:
 
 ```bash
 staramr --help
@@ -171,7 +171,7 @@ staramr --help
 If you wish to use `staramr` in an isolated environment (in case dependencies conflict) you may alternatively install with:
 
 ```bash
-conda create -c bioconda --name staramr staramr
+conda create -c bioconda --name staramr staramr==0.7.1
 ```
 
 To run `staramr` in this case, you must first activate the environment.  That is: