Merge branch 'development'

phac-nml · Dec 17, 2019 · 820191c · 820191c
2 parents 276074b + 1421e05
commit 820191c
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Showing 3 changed files with 6 additions and 2 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,7 @@
+# Version 0.7.1
+
+* Fix a bug so that the Sequence column in resfinder.tsv uses the isolate sequence instead of the reference sequence
+
 # Version 0.7.0
 
 * Added quality module that adds PASS/Fail column and detail information in Summary.tsv

diff --git a/staramr/__init__.py b/staramr/__init__.py
@@ -1 +1 @@
-__version__ = '0.7.0'
+__version__ = '0.7.1'
diff --git a/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py b/staramr/blast/results/resfinder/BlastResultsParserResfinderResistance.py
@@ -54,5 +54,5 @@ def _get_result_rows(self, hit, database_name):
                  hit.get_genome_contig_start(),
                  hit.get_genome_contig_end(),
                  hit.get_amr_gene_accession(),
-                 hit.get_amr_gene_seq()
+                 hit.get_genome_contig_hsp_seq()
                  ]]