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Issues list

strandness error bug Something isn't working
#1420 opened Oct 17, 2024 by aheravi
2
3.16.x does not allow numeric sample ids bug Something isn't working
#1419 opened Oct 17, 2024 by idot
2
Restore the set -C when the concerned modules are fixed
#1404 opened Oct 10, 2024 by maxulysse
Option to keep chimeric reads after UMI deduplication enhancement
#1373 opened Sep 4, 2024 by siddharthab 3.17.0
1
Improve qualimap execution time enhancement
#1356 opened Aug 20, 2024 by PramodRaoB 3.17.0
2
SortMeRNA database version enhancement
#1354 opened Aug 16, 2024 by wzheng0520 3.17.0
3
Sanity-check the sample names before committing to any data processing enhancement
#1349 opened Aug 2, 2024 by fruce-ki
To use STAR module, how should the GTF file look like
#1347 opened Jul 24, 2024 by huma1995
1
Updating picard to 3.2.0 fails pipeline level tests
#1346 opened Jul 22, 2024 by maxulysse
1
2
Accept uncompressed files, for instance fastq enhancement
#1343 opened Jul 17, 2024 by TheWizier
1
NFCORE_RNASEQ takes values from global scope
#1339 opened Jul 9, 2024 by adamrtalbot
Stubs all the way down enhancement
#1338 opened Jul 9, 2024 by maxulysse
1
Add support to use the pipeline with NGS generated using zymo research kit enhancement
#1337 opened Jul 6, 2024 by Ahmedalaraby20
3
Add tximport for RSEM outputs enhancement
#1320 opened Jun 18, 2024 by olgabot
pipeline no longer compatible with newest STAR 2.7.11b bug Something isn't working
#1316 opened Jun 12, 2024 by gvogler
Error running process NFCORE_RNASEQ:RNASEQ:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION bug Something isn't working
#1315 opened Jun 12, 2024 by charlesdavid
1
Please add gene names to merged rsem output files enhancement
#1300 opened May 14, 2024 by ianyfchang
Validate FASTQs prior to running pipeline enhancement
#1281 opened Apr 10, 2024 by adamrtalbot 3.17.0
Add additional FastQC step after optional BBSplit and/or SortMeRNA awaiting-response-developers enhancement
#1276 opened Mar 28, 2024 by ppericard 3.17.0
Two Bigwig files per sample are generated representing each strand awaiting-response-community enhancement
#1275 opened Mar 26, 2024 by drimran87 3.17.0
3
Qualimap assigns more reads to exonic regions than total reads in the sample awaiting-response-developers documentation
#1273 opened Mar 21, 2024 by ctuni 3.17.0
Salmon --keepDuplicates by default enhancement
#1259 opened Mar 12, 2024 by adamrtalbot 3.17.0
2
BBPSPLIT fails cryptically with user errors bug Something isn't working
#1130 opened Nov 22, 2023 by pinin4fjords
4
Explicit subsampling step in rnaseq pipeline enhancement
#1097 opened Oct 17, 2023 by ewallace 3.17.0
1
Turn off quantification flag enhancement
#1089 opened Oct 10, 2023 by adamrtalbot 3.17.0
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