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Running FASTP or Trimgalore is a large overhead if you have corrupted FASTQ files. We could add FQ_LINT early in the pipeline to verify the FASTQ file integrity before running any larger processes. This would also produce a detailed report on FASTQ file validity.
The text was updated successfully, but these errors were encountered:
Description of feature
Running FASTP or Trimgalore is a large overhead if you have corrupted FASTQ files. We could add FQ_LINT early in the pipeline to verify the FASTQ file integrity before running any larger processes. This would also produce a detailed report on FASTQ file validity.
The text was updated successfully, but these errors were encountered: