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Update MEGAHIT container URLs #3689

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wants to merge 4 commits into from
Closed

Update MEGAHIT container URLs #3689

wants to merge 4 commits into from

Commits on Aug 1, 2023

  1. Update MEGAHIT container URLs

    @gariem
    gariem authored Aug 1, 2023
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  2. Using gzip until Docker image gets updated 

    As per voutcn/megahit#360 pigz is not currently installed in the MEGAHIT biocontainer images (singularity: https://depot.galaxyproject.org/singularity/megahit:1.2.9--h5b5514e_2 - docker: quay.io/biocontainers/megahit:1.2.9--h5b5514e_3). Therefore, the NF-Core module will fail to compress the contigs using pigz. 

This commit resolves the described fix.
    @gariem
    gariem authored Aug 1, 2023
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Commits on Aug 2, 2023

  1. Merge branch 'master' into patch-2

    @adamrtalbot
    adamrtalbot authored Aug 2, 2023
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  2. Update modules/nf-core/megahit/main.nf 

    Co-authored-by: Adam Talbot <[email protected]>
    @gariem @adamrtalbot
    gariem and adamrtalbot authored Aug 2, 2023
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