Update MEGAHIT container URLs #3689
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As per voutcn/megahit#360 pigz is not currently installed in the MEGAHIT biocontainer images (singularity: https://depot.galaxyproject.org/singularity/megahit:1.2.9--h5b5514e_2 - docker: quay.io/biocontainers/megahit:1.2.9--h5b5514e_3). Therefore, the NF-Core module will fail to compress the contigs using pigz. This commit resolves the described fix.
adamrtalbot
reviewed
Aug 2, 2023
| --no-name \\ | ||
| -p $task.cpus \\ | ||
| $args2 \\ | ||
| gzip \\ |
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Was pigz included for a reason? I'd like to check before discarding.
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Pigz runs the compression taks faster (in parallel), but sadly it's not included in the docker image provided by the author. I have requested it to be added as well here: voutcn/megahit#360
Co-authored-by: Adam Talbot <[email protected]>
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Replace docker and singularity image URLs with current ones from biocontainers project.