318 update for tes compliance #12
GitHub Actions / JUnit Test Report
failed
Sep 16, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
github-actions / JUnit Test Report
nf.Parameters: --skip_fastq_download
Assertion failed:
1 of 3 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-8438f5d91bc08a5f29f200962ac061dc.nf` [jolly_mendel] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[b0/2b37a6] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[74/51a3fe] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[6a/6f1b27] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[c0/da671d] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[c6/40318b] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
[a4/1d98a7] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[f3/7afaaf] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[8a/f2c253] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[ce/7310cd] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
[03/a86b1f] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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