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Test successful pipeline download with 'nf-core download'

318 update for tes compliance #12

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318 update for tes compliance

318 update for tes compliance #12

Triggered via pull request September 16, 2024 03:57
@vsmalladivsmalladi
synchronize #320
Status Success
Total duration 14m 25s
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download_pipeline.yml

on: pull_request_target
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14m 16s
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20 errors and 2 warnings
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
Test process: MULTIQC_MAPPINGS_CONFIG.Should run without failures: Test process: MULTIQC_MAPPINGS_CONFIG#L1
Assertion failed: 1 of 2 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline taxprofiler: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline viralrecon: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq --ena_metadata_fields ... --sample_mapping_fields ...: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: default: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --skip_fastq_download: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline rnaseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --nf_core_pipeline atacseq: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method sratools: nf#L1
Assertion failed: 1 of 3 assertions failed
nf.Parameters: --download_method aspera: nf#L1
Assertion failed: 1 of 3 assertions failed
download
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
download
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@b9f764e8ba5c76b712ace14ecbfcef0e40ae2dd8, eWaterCycle/setup-singularity@931d4e31109e875b13309ae1d07c70ca8fbc8537. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/