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318 update some modeles for tes compliance #1018

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318 update some modeles for tes compliance

318 update some modeles for tes compliance #1018

GitHub Actions / JUnit Test Report failed Sep 16, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.Parameters: --nf_core_pipeline viralrecon 

Assertion failed: 

1 of 3 assertions failed
Raw output 
Nextflow stdout:

N E X T F L O W  ~  version 24.08.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/.nf-test-e98bf0373b6366d6dcbf2bff024f63cd.nf` [sad_kalam] DSL2 - revision: 68dcf2aadf
Downloading plugin [email protected]
[30/a97b7d] Submitted process > SRA:SRA_IDS_TO_RUNINFO (DRX026011)
[fe/89d483] Submitted process > SRA:SRA_IDS_TO_RUNINFO (ERX1234253)
[59/9bb7e2] Submitted process > SRA:SRA_IDS_TO_RUNINFO (SRX6725035)
[4a/3187c3] Submitted process > SRA:SRA_RUNINFO_TO_FTP (1)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[a1/a46d0f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (2)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[75/744077] Submitted process > SRA:SRA_FASTQ_FTP (ERX1234253_ERR1160846)
[c5/6a3ff1] Submitted process > SRA:SRA_FASTQ_FTP (DRX026011_DRR028935)
[98/8f618f] Submitted process > SRA:SRA_RUNINFO_TO_FTP (3)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[ea/ddf0fa] Submitted process > SRA:SRA_TO_SAMPLESHEET (ERX1234253_ERR1160846)
WARN: Process `SRA:SRA_RUNINFO_TO_FTP` publishDir path contains a variable with a null value
[f1/16d817] Submitted process > SRA:SRA_FASTQ_FTP (SRX6725035_SRR9984183)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[0d/3a9093] Submitted process > SRA:SRA_TO_SAMPLESHEET (DRX026011_DRR028935)
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
WARN: Process `SRA:SRA_FASTQ_FTP` publishDir path contains a variable with a null value
[a4/b65d2b] Submitted process > SRA:SRA_TO_SAMPLESHEET (SRX6725035_SRR9984183)
[b8/ee9b9a] Submitted process > SRA:MULTIQC_MAPPINGS_CONFIG (1)
WARN: Process `SRA:MULTIQC_MAPPINGS_CONFIG` publishDir path contains a variable with a null value
Nextflow stderr:
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