Refactor ext config as params #1208
GitHub Actions / JUnit Test Report
failed
May 1, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
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Check failure on line 1 in Parameters: default
github-actions / JUnit Test Report
Parameters: default
Assertion failed:
1 of 8 assertions failed
Raw output
Nextflow stdout:
N E X T F L O W ~ version 24.03.0-edge
Launching `/home/runner/work/fetchngs/fetchngs/~/tests/bab0ec17fdfa0bdc539dbb8e7db3038e/meta/mock.nf` [tiny_marconi] DSL2 - revision: 21d9d3d377
Downloading plugin [email protected]
[01/eb32cc] Submitted process > FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS (ncbi-settings)
WARN: Process `FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:CUSTOM_SRATOOLSNCBISETTINGS` publishDir path contains a variable with a null value
[73/c37c8f] Submitted process > FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (DRR000774)
[0a/9dfd92] Submitted process > FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_PREFETCH (SRR11140744)
[f8/68d32f] Submitted process > FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (test_single_end)
[c3/404931] Submitted process > FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP (test_paired_end)
WARN: Process `FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
WARN: Process `FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS:SRATOOLS_FASTERQDUMP` publishDir path contains a variable with a null value
Nextflow stderr:
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