nf-core linting

Refactor ext config as params #1208

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GitHub Actions / JUnit Test Report failed May 1, 2024 in 0s

2 tests run, 0 passed, 0 skipped, 2 failed.

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Check failure on line 1 in Single-end

github-actions / JUnit Test Report

Single-end

Assertion failed: 

2 of 2 assertions failed

Raw output


            Nextflow stdout:

N E X T F L O W  ~  version 23.04.5
Nextflow stderr:

The specified configuration file does not exist: /home/runner/work/fetchngs/fetchngs/modules/nf-core/sratools/fasterqdump/tests/./nextflow.config -- check the name or choose another file

Check failure on line 1 in Paired-end

github-actions / JUnit Test Report

Paired-end

Assertion failed: 

2 of 2 assertions failed

Raw output


            Nextflow stdout:

N E X T F L O W  ~  version 23.04.5
Nextflow stderr:

The specified configuration file does not exist: /home/runner/work/fetchngs/fetchngs/modules/nf-core/sratools/fasterqdump/tests/./nextflow.config -- check the name or choose another file

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