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Upgrade Earlinet reader and implement vertical profiles #855

Merged
merged 166 commits into from
Oct 3, 2023
Merged

Upgrade Earlinet reader and implement vertical profiles #855

merged 166 commits into from
Oct 3, 2023

Commits on Apr 24, 2023

  1. checking initial functionality wip

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    lewisblake committed Apr 24, 2023
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Commits on Apr 25, 2023

  1. read_file should be good now. test zdust though

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    lewisblake committed Apr 25, 2023
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  2. typing and fix assert barrier

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    lewisblake committed Apr 25, 2023
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  3. close to first draft. minor fixes for tomorrow morning

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    lewisblake committed Apr 25, 2023
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Commits on Apr 26, 2023

  1. change altitude in data_obj to be station lat. daa alt already defined

    @lewisblake
    lewisblake committed Apr 26, 2023
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  2. add ec355aer

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    lewisblake committed Apr 26, 2023
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  3. working on tests

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    lewisblake committed Apr 26, 2023
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Commits on Apr 27, 2023

  1. use pandas.Timestamp().to_numpy()

    @lewisblake
    lewisblake committed Apr 27, 2023
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  2. remove breakpoint()

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    lewisblake committed Apr 27, 2023
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  3. squeeze err

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    lewisblake committed Apr 27, 2023
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  4. working on tests but need to to think about directory structure

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    lewisblake committed Apr 27, 2023
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Commits on May 3, 2023

  1. update paths.ini with temp path for testing

    @lewisblake
    lewisblake committed May 3, 2023
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  2. fix up get_file_list

    @lewisblake
    lewisblake committed May 3, 2023
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  3. fix up get_file_list tests

    @lewisblake
    lewisblake committed May 3, 2023
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  4. working on tets: figure out converting to station data

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    lewisblake committed May 3, 2023
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Commits on May 4, 2023

  1. dtime needed .astype("datetime64[s]")

    @lewisblake
    lewisblake committed May 4, 2023
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  2. test_ReadEarlinet_read working

    @lewisblake
    lewisblake committed May 4, 2023
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  3. adjust number of files since onefile.txt updated

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    lewisblake committed May 4, 2023
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  4. update paths

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    lewisblake committed May 4, 2023
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  5. update __version__

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    lewisblake committed May 4, 2023
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  6. add ec355aer to variables.ini

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Commits on May 5, 2023

  1. working on pushing through to aeroval

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  2. working on getting through to aeroval with altitude

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Commits on May 11, 2023

  1. seeing where ungriddeddata fails WIP

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Commits on May 12, 2023

  1. start a colocation 3d file

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    lewisblake committed May 12, 2023
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  2. obs_is_3d

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    lewisblake committed May 12, 2023
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  3. skip stuff if var is altitude. may remove later

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  4. change earlinet ts_type to hourly

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    lewisblake committed May 12, 2023
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  5. working on is_vertical_profile property

    @lewisblake
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  6. linters

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  7. figuring out why is_vertical_profile not being set

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    lewisblake committed May 12, 2023
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Commits on May 15, 2023

  1. Merge branch 'main-dev' into earlinet

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    lewisblake committed May 15, 2023
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Commits on May 19, 2023

  1. figured a way to pass vertical profile form reader to ungriddeddata

    @lewisblake
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  2. attempt at obs_is_vertical_profile

    @lewisblake
    lewisblake committed May 19, 2023
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  3. setter and get obs_is_vertical_profile

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    lewisblake committed May 19, 2023
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  4. breakpoint in new colocator

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    lewisblake committed May 19, 2023
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  5. resolve_var_name no longer private

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  6. more private methods to public to import other places, probs shoulda … 

    …been public anyway
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  7. verticalprofile colocator WIP

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    lewisblake committed May 19, 2023
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  8. WIP

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Commits on May 23, 2023

  1. colocation_layer_limits passed to new colocator

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    lewisblake committed May 23, 2023
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  2. remove dead code

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Commits on May 30, 2023

  1. WIP

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Commits on Jul 10, 2023

  1. merge main-dev to keep current 

    Merge branch 'main-dev' into earlinet
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  2. start and end plus checker in function

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  3. filter obs_data by altitudes in vertical layer

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Commits on Jul 11, 2023

  1. add station altitude to altitudes

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  2. comment out colocation and profile layer limits from model entry

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  3. profile layer limits also included

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  4. can't use model_level_number

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Commits on Jul 12, 2023

  1. 4D model data in colocator. requires preprocessing

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Commits on Jul 13, 2023

  1. strategy is to create 2D layer time_series in loop

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Commits on Jul 14, 2023

  1. prepared arguments for colocation helpers

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Commits on Jul 17, 2023

  1. got through for loop, check colocation nans

    @lewisblake
    lewisblake committed Jul 17, 2023
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  2. major refactor into a helper function

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    lewisblake committed Jul 17, 2023
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  3. output a namedtuple

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Commits on Jul 18, 2023

  1. named tuple output and type hints

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  2. can run through w/o crashing but modify output

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  3. figuring out why no data

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    lewisblake committed Jul 18, 2023
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Commits on Jul 19, 2023

  1. use correct statistics terminology

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  2. add vertical_layer to coldata meta

    @lewisblake
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  3. Finding out why no data WIP

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  4. Finding out why no data in output WIP

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  5. got the the point where need json output examples

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  6. from __future__ import annotations

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Commits on Jul 20, 2023

  1. change vertical_layer for output

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  2. working on profile json output WIP

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Commits on Jul 21, 2023

  1. write profile json 1st draft

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Commits on Jul 22, 2023

  1. add profile JSON_SUBDIRS

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    lewisblake committed Jul 22, 2023
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  2. correct profile output

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    lewisblake committed Jul 22, 2023
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  3. check bug in profile output

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    lewisblake committed Jul 22, 2023
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Commits on Jul 24, 2023

  1. clean up

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  2. skip earlinet tests that need new data

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  3. skips tests that need new earlinet data

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  4. linters

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  5. output profiles not profile

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  6. separate profiles by station_name

    @lewisblake
    lewisblake committed Jul 24, 2023
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  7. fix layer colocation bug

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    lewisblake committed Jul 24, 2023
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Commits on Jul 25, 2023

  1. clean up and testing

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  2. change unit on metadata to m

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Commits on Aug 7, 2023

  1. _colocate_vertical_profile_gridded

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  2. ColocatedDataLists class

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Commits on Sep 5, 2023

  1. profiles vized. need to change alt units

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Commits on Sep 6, 2023

  1. figured out altitude units

    @lewisblake
    lewisblake committed Sep 6, 2023
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  2. add some meta from coldata

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Commits on Sep 7, 2023

  1. change units on extinction vars

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  2. formatting and units

    @lewisblake
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  3. use hasattr()

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  4. unit to km in tests

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  5. isort

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  6. aeronet tests

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  7. 13

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  8. modify CI

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  9. black

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  10. remove some notes to self

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Commits on Sep 8, 2023

  1. remove dev notes

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  2. save coldata objs w/ vertical layers in km

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  3. remove notes to self. convert to TODOs

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  4. remove notes to self

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  5. linters

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  6. remove dead breakpoints

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  7. make empty test_colocation_3d file

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  8. Merge branch 'main-dev' into earlinet

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  9. cleanup not needed imports

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Commits on Sep 11, 2023

  1. getting tests ready for local testing

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  2. test_read-earlinet passing local CI

    @lewisblake
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  3. need to include model and obs in testdata-minimal

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Commits on Sep 13, 2023

  1. testing WIP

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  2. testing WIP

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  3. altitude for stations back in meters

    @lewisblake
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  4. remove dead code

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  5. prepare creating of fake data

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    lewisblake committed Sep 13, 2023
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Commits on Sep 14, 2023

  1. exctinction & backscatter colorbars

    @lewisblake
    lewisblake committed Sep 14, 2023
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  2. testing WIP

    @lewisblake
    lewisblake committed Sep 14, 2023
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Commits on Sep 15, 2023

  1. working on fixtures that need fixtures

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    lewisblake committed Sep 15, 2023
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Commits on Sep 19, 2023

  1. colocation_3d tests work

    @lewisblake
    lewisblake committed Sep 19, 2023
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  2. update testdfata-minimal file

    @lewisblake
    lewisblake committed Sep 19, 2023
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  3. linters and remove dead code

    @lewisblake
    lewisblake committed Sep 19, 2023
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  4. linters

    @lewisblake
    lewisblake committed Sep 19, 2023
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  5. remove dead code

    @lewisblake
    lewisblake committed Sep 19, 2023
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  6. use hasattr()

    @lewisblake
    lewisblake committed Sep 19, 2023
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  7. vert_code

    @lewisblake
    lewisblake committed Sep 19, 2023
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  8. clean up

    @lewisblake
    lewisblake committed Sep 19, 2023
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  9. clean up

    @lewisblake
    lewisblake committed Sep 19, 2023
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  10. test_load_berlin has 4 files

    @lewisblake
    lewisblake committed Sep 19, 2023
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  11. typo fix

    @lewisblake
    lewisblake committed Sep 19, 2023
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  12. clean up

    @lewisblake
    lewisblake committed Sep 19, 2023
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  13. test_get_profilename

    @lewisblake
    lewisblake committed Sep 19, 2023
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  14. no cover profile exts of funs w/o current tests

    @lewisblake
    lewisblake committed Sep 19, 2023
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  15. isort

    @lewisblake
    lewisblake committed Sep 19, 2023
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  16. remove old earlinet test

    @lewisblake
    lewisblake committed Sep 19, 2023
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  17. remove old earlinet test parameterizations

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    lewisblake committed Sep 19, 2023
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Commits on Sep 20, 2023

  1. clean up

    @lewisblake
    lewisblake committed Sep 20, 2023
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  2. reintroduce test_stationdata

    @lewisblake
    lewisblake committed Sep 20, 2023
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Commits on Sep 21, 2023

  1. Alvaro feedback round 1

    @lewisblake
    lewisblake committed Sep 21, 2023
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  2. remove dead code

    @lewisblake
    lewisblake committed Sep 21, 2023
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Commits on Sep 25, 2023

  1. Merge branch 'main-dev' into earlinet

    @lewisblake
    lewisblake committed Sep 25, 2023
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Commits on Sep 28, 2023

  1. Merge branch 'main-dev' into earlinet

    @lewisblake
    lewisblake committed Sep 28, 2023
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  2. adding comments about methods and typing

    @lewisblake
    lewisblake committed Sep 28, 2023
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  3. remove kwargs

    @lewisblake
    lewisblake committed Sep 28, 2023
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  4. type hints

    @lewisblake
    lewisblake committed Sep 28, 2023
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  5. use numpy array instead of list of nans

    @lewisblake
    lewisblake committed Sep 28, 2023
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  6. ALLOWED_VERT_CORD_TYPES

    @lewisblake
    lewisblake committed Sep 28, 2023
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  7. Merge branch 'main-dev' into earlinet

    @lewisblake
    lewisblake committed Sep 28, 2023
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  8. Merge branch 'main-dev' into earlinet

    @lewisblake
    lewisblake committed Sep 28, 2023
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Commits on Sep 29, 2023

  1. Merge branch 'main-dev' into earlinet

    @lewisblake
    lewisblake committed Sep 29, 2023
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  2. improve colocation_3d tests

    @avaldebe
    avaldebe committed Sep 29, 2023
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  3. _aerocom_savename

    @lewisblake
    lewisblake committed Sep 29, 2023
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  4. no blind except

    @lewisblake
    lewisblake committed Sep 29, 2023
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  5. _process_profile_data_for_vizualization

    @lewisblake
    lewisblake committed Sep 29, 2023
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  6. from __future__ import annotations

    @lewisblake
    lewisblake committed Sep 29, 2023
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  7. clean up vert_code

    @lewisblake
    lewisblake committed Sep 29, 2023
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Commits on Oct 2, 2023

  1. _process_stats_timeseries_for_all_regions

    @lewisblake
    lewisblake committed Oct 2, 2023
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  2. if hasattr(coldata.data, "altitude_units")

    @lewisblake
    lewisblake committed Oct 2, 2023
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  3. _get_vert_code(self, ...)

    @lewisblake
    lewisblake committed Oct 2, 2023
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  4. remove duplicated depenency

    @lewisblake
    lewisblake committed Oct 2, 2023
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  5. clean up and check start and end

    @lewisblake
    lewisblake committed Oct 2, 2023
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  6. remove pd.to_timseries() on obs

    @lewisblake
    lewisblake committed Oct 2, 2023
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  7. clean up

    @lewisblake
    lewisblake committed Oct 2, 2023
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  8. go back to old stats[0] in test_stationdata

    @lewisblake
    lewisblake committed Oct 2, 2023
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  9. info -> debug in stationdata

    @lewisblake
    lewisblake committed Oct 2, 2023
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  10. bring back sigfigs in test_read_earlinet

    @lewisblake
    lewisblake committed Oct 2, 2023
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  11. ALLOWED_VERT_CORD_TYPES again

    @lewisblake
    lewisblake committed Oct 2, 2023
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  12. colocation_3d # pragma: no covers

    @lewisblake
    lewisblake committed Oct 2, 2023
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  13. swap order any checking of DataUnitError

    @lewisblake
    lewisblake committed Oct 2, 2023
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  14. self.ALLOWED_VERT_COORD_TYPES

    @lewisblake
    lewisblake committed Oct 2, 2023
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