Overview: The mitoz tools command

The command mitoz-tools has different subcommands for different purposes.

$ mitoz-tools
usage: mitoz-tools [-h] [--version]
                   {bold_identification,taxonomy_ranks,msaconverter,gbseqextractor,gbfiletool,circle_check,group_seq_by_gene}
                   ...

This file is part of MitoZ.

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COPYRIGHT 2019-2022 Guanliang Meng. ALL RIGHTS RESERVED.

positional arguments:
  {bold_identification,taxonomy_ranks,msaconverter,gbseqextractor,gbfiletool,circle_check,group_seq_by_gene}
    bold_identification
                        To identify taxa of given sequences from BOLD (http://www.boldsystems.org/).
    taxonomy_ranks      To get the lineage information of input taxid, species name, or higher ranks
    msaconverter        Convert multiple-sequence-alignment into different formats.
    gbseqextractor      Extract any CDS or rNRA or tRNA DNA sequences of genes from Genbank file.
    gbfiletool          A tool to deal with genbank records: cut, comrev, sort and select
    circle_check        Check whether the sequences are circular when the sequences have length >= 12Kbp
    group_seq_by_gene   To group the gene sequences of different samples into different files by genes.

optional arguments:
  -h, --help            show this help message and exit
  --version             show program's version number and exit

Some tools are only available at >= 3.5-beta-1 versions.