Merge branch 'pf' with channel for python 3.5 specified #1
limrptest.yml
on: push
pytest-changes
4s
nf-test-changes
5s
Matrix: nf-core-lint
Matrix: pytest
Matrix: nf-test
confirm-pass
1s
Annotations
73 errors and 2 warnings
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nf-core-lint (basicpy)
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nf-core-lint (cellpose)
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nf-core-lint (cellranger/mkfastq)
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nf-core-lint (fastk/histex)
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nf-core-lint (fastk/fastk)
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pytest (cellpose, docker)
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pytest (bclconvert, singularity)
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pytest (cellranger/count, docker)
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pytest (cellpose, singularity)
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pytest (cellranger/count, singularity)
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pytest (cellranger/mkfastq, docker)
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pytest (cellranger/mkgtf, docker)
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pytest (cellranger/mkfastq, singularity)
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pytest (cellranger/mkref, docker)
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pytest (cellranger/mkgtf, singularity)
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pytest (cellranger/mkref, singularity)
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pytest (cellranger/mkvdjref, docker)
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pytest (cellranger/mkvdjref, singularity)
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pytest (cellranger/multi, docker)
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pytest (cellranger/vdj, docker)
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pytest (cellranger/multi, singularity)
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pytest (cellranger/vdj, singularity)
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pytest (deepvariant, singularity)
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pytest (deepvariant, docker)
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pytest (fastk/fastk, docker)
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pytest (fastk/histex, docker)
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pytest (fastk/fastk, singularity)
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pytest (kmcp/compute, conda)
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pytest (fastk/histex, singularity)
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pytest (kmcp/compute, docker)
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pytest (bclconvert, docker)
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pytest (kmcp/profile, docker)
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pytest (kmcp/compute, singularity)
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pytest (kmcp/profile, singularity)
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pytest (kmcp/search, conda)
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pytest (kmcp/profile, conda)
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pytest (basicpy, docker)
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pytest (basicpy, docker)
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pytest (kmcp/search, docker)
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pytest (bcl2fastq, docker)
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pytest (bcl2fastq, docker)
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pytest (plasflow, conda)
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pytest (bcl2fastq, singularity)
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pytest (bcl2fastq, singularity)
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pytest (sentieon/applyvarcal, singularity)
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pytest (plasflow, docker)
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pytest (kmcp/search, singularity)
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pytest (plasflow, singularity)
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pytest (sentieon/applyvarcal, docker)
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pytest (sentieon/bwaindex, docker)
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pytest (sentieon/bwaindex, singularity)
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pytest (sentieon/bwamem, docker)
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pytest (sentieon/dedup, docker)
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pytest (sentieon/bwamem, singularity)
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pytest (sentieon/dedup, singularity)
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pytest (sentieon/gvcftyper, docker)
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pytest (sentieon/gvcftyper, singularity)
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pytest (sentieon/varcal, docker)
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pytest (sentieon/haplotyper, singularity)
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pytest (sentieon/varcal, singularity)
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pytest (sentieon/haplotyper, docker)
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pytest (seqkit/fx2tab, conda)
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pytest (seqkit/fx2tab, docker)
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pytest (snakemake, conda)
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pytest (seqkit/fx2tab, singularity)
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pytest (snakemake, docker)
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pytest (snakemake, singularity)
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nf-test (snakemake, docker)
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nf-test (snakemake, conda)
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nf-test (snakemake, singularity)
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pytest (bases2fastq, singularity)
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pytest (basicpy, singularity)
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confirm-pass
Process completed with exit code 1.
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pytest (bases2fastq, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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pytest (basicpy, singularity)
The following actions uses node12 which is deprecated and will be forced to run on node16: eWaterCycle/setup-singularity@v7. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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