Add new ro-crate exploration tuto #5260
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@stain could you or someone from your team please review it? Its ESG relevant :) |
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@Marie59 do you think a video of this would be useful as well? All what you need to add are speaker notes. |
Yes, I was thinking to do that to in e 2nd time ;) I'll try do to that in the week or so |
topics/fair/tutorials/earth_system_rocrate/images/rocrate10.png
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I think @elichad can help review. |
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Thanks for the review @hexylena !! |
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| - "RO-Crate in earth-system analysis" | ||
| - "Marine omics workflow " | ||
| contributors: |
| The workflow used as an example here goes from : | ||
| - First, produce a protein FASTA file from a nucleotide FASTA file using Prodigal (a tool that predicts protein-coding genes from DNA sequences). | ||
| - Then, use InterProscan to create a tabular. Interproscan is a batch tool to query the InterPro database. It helps identify and predict the functions of proteins by comparing them to known databases. | ||
| - Finally, discover SanntiS both to build genbank and especially to detect and annotate biosynthetic gene clusters (BGCs). |
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maybe you can also link the tools?
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| Import and run the following workflow https://earth-system.usegalaxy.eu/u/marie.josse/w/marine-omics-identifying-biosynthetic-gene-clusters | ||
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| To know more on how to do that follow the tutorial https://training.galaxyproject.org/training-material/topics/ecology/tutorials/marine_omics_bgc/tutorial.html |
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Please try to use the link syntax.
Similar to The [Galaxy Core Architecture slides]({% link topics/dev/tutorials/architecture/slides.html %})
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| ## Run the workflow | ||
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| Import and run the following workflow https://earth-system.usegalaxy.eu/u/marie.josse/w/marine-omics-identifying-biosynthetic-gene-clusters |
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You can now embedd workflows. Have yout tried if this is working in slides?
https://galaxyproject.org/news/2024-04-26-workflows-workflows-workflows/
Hello everybody !
So, I did a bit of work to understand ro-crate for myself and to do so I used a workflow of earth-system I just did.
I thought maybe it could be interesting to share the work I did for RO-Crate babies like me ;)
What are you though on that ?
As you can see in the beginning I tell the the user to go check 2 other tutorials. Should I put that in the prerequisites or leave like that so that it's very visible? Or create a learning pathway ?
What is the best approach here ?
Plus, it's the 1st time I try a slide tuto hope it's okay ! ;)