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47 Open 643 Closed
47 Open 643 Closed
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Issues list

SNP but not seen in IGV bug
#815 opened Oct 16, 2024 by cpwater
Missing 'aln.bam' file in Naive variant calling readme example
#814 opened Oct 16, 2024 by veghp
freebayes-parallel error bug
#813 opened Oct 11, 2024 by bfraser-commits
Strand Bias probability
#812 opened Oct 4, 2024 by shamavirani
question on using --bam-list
#810 opened Aug 19, 2024 by goeckeritz
Statically linked binary for freebayes 1.3.8 are missing bug
#809 opened Aug 16, 2024 by marc-sturm
Compressed bgzip reference file
#808 opened Aug 1, 2024 by aghozlane
In/Del variants missed by Freebayes 1.3.8
#807 opened Jul 4, 2024 by h836472
4
Failed to clone 'contrib/multichoose' a second time, aborting bug
#806 opened Jun 28, 2024 by konopinski
2
Can't access mailing group - banned content bug
#805 opened Jun 21, 2024 by mcjmigdal
Two adjacent SNPs reported rather then a MNP? bug
#804 opened Jun 17, 2024 by Jesspalmer92
Freebayes 1.3.8 does not build bug
#803 opened Jun 13, 2024 by feghalya
Incongruencies in GT assignment bug
#793 opened Apr 4, 2024 by Virginia-b
1
frequency of each variant per sample
#792 opened Apr 3, 2024 by emilydolivo97
4
Multiple bases returned instead of SNPs in one of the two replicates bug
#787 opened Mar 25, 2024 by NitKV
freebayes did not report variants with AC < 4? bug
#785 opened Mar 11, 2024 by yzliu01
Very high QUAL values
#782 opened Feb 8, 2024 by mbhall88
7
Inexplicably low DP values bug
#781 opened Jan 31, 2024 by jpalmer37
3
Actual full name arguments for -iXU don't seem to match --help bug
#778 opened Dec 5, 2023 by G3N0M3
freebayes does not work with low values of --min-alternate-fraction 0 bug
#777 opened Nov 6, 2023 by friburgo-moc
BA.2.86 SRR25750759 ins21608 call surprisingly dependent --min-alternate-fraction parameter bug
#775 opened Sep 6, 2023 by krobison13
2
Aborted (core dumped) bug
#771 opened Jun 12, 2023 by suhuanhou
1
genotype calling are not consistent with RO and AO number bug
#768 opened May 17, 2023 by suncpark
1
ARM NEON build fails: undefined reference to rans_compress_O0_32x16_neon in bundled htslib bug
#767 opened Apr 26, 2023 by buildmaster0
3
Error: signal 11: when using parallel --targets bug
#764 opened Feb 9, 2023 by mlarjim
5
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