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SNP but not seen in IGV #815

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cpwater opened this issue Oct 16, 2024 · 0 comments
Open

SNP but not seen in IGV #815

cpwater opened this issue Oct 16, 2024 · 0 comments
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@cpwater
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cpwater commented Oct 16, 2024 •
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Hi there:
I called SNPs using freebayes and got 2 SNPs (15725855 and 15726131) but the variant is now shown in IGV, is my process wrong or sth else?
This occurred to other sample with depth more than 5 in vcf file but nearly no in IGV.

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Thanks!
@cpwater cpwater added the bug label Oct 16, 2024
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