Useful Code

The project provides some code sharing by members of Precision Medicine Genetics Lab.

PYTHON

The directory ./python list some useful python code.

pvalue_adjust_FDR

pvalue_adjust_FDR.py, adjust the pvalue by Benjamini & Hochberg FDR.

ConvertIMPUT2toPLINK

Convert IMPUT2 (.gen/.sample) format to PLINK (.map/.ped) format (low performance).

JAVA

ThreadPool.java

An example of ExecutorService usage in java.

CallShell.java

An example of calling shell in java.

CoverageCalculation

Calculate the coverage and depth at whole genome exons by samtools.

ConvertIMPUT2toPLINK

Convert IMPUT2 (.gen/.sample) format to PLINK (.map/.ped) format (high performance).