Skip to content

add external pressure #168

add external pressure

add external pressure #168

Triggered via pull request November 20, 2023 13:30
Status Failure
Total duration 32m 43s
Artifacts

CI.yml

on: pull_request
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

13 errors and 4 warnings
Julia 1.8 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia 1.9 - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia nightly - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:130-135 ```@example BjordalsbakkeModel @nAmed Rs = Resistor(R=R_s) @nAmed Csa = Compliance(C=C_sa) @nAmed Csv = Compliance(C=C_sv, inV=true) ``` exception = MethodError: no method matching Compliance(; inV::Bool, name::Symbol, C::Float64) Closest candidates are: Compliance(; name, V₀, C, inP, has_ep, has_variable_ep, p₀) got unsupported keyword argument "inV" @ CirculatorySystemModels ~/.julia/packages/ModelingToolkit/66mEN/src/systems/abstractsystem.jl:1167 Stacktrace: [1] kwerr(kw::NamedTuple{(:inV, :name, :C), Tuple{Bool, Symbol, Float64}}, args::Function) @ Base ./error.jl:165 [2] top-level scope @ ~/.julia/packages/ModelingToolkit/66mEN/src/systems/abstractsystem.jl:1003 [3] eval @ ./boot.jl:370 [inlined] [4] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [5] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [6] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [7] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [8] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [9] with_logger @ ./logging.jl:626 [inlined] [10] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [11] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:148-157 ```@example BjordalsbakkeModel circ_eqs = [ connect(LV.out, AV.in) connect(AV.out, Csa.in) connect(Csa.out, Rs.in) connect(Rs.out, Csv.in) connect(Csv.out, MV.in) connect(MV.out, LV.in) ] ``` exception = UndefVarError: `Csv` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:149 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:165-170 ```@example BjordalsbakkeModel @nAmed _circ_model = ODESystem(circ_eqs, t) @nAmed circ_model = compose(_circ_model, [LV, AV, MV, Rs, Csa, Csv]) ``` exception = UndefVarError: `circ_eqs` not defined Stacktrace: [1] top-level scope @ ~/.julia/packages/ModelingToolkit/66mEN/src/systems/abstractsystem.jl:1003 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:176-178 ```@example BjordalsbakkeModel circ_sys = structural_simplify(circ_model) ``` exception = UndefVarError: `circ_model` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:177 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:186-188 ```@example BjordalsbakkeModel states(circ_sys) ``` exception = UndefVarError: `circ_sys` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:187 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:192-194 ```@example BjordalsbakkeModel observed(circ_sys) ``` exception = UndefVarError: `circ_sys` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:193 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:198-200 ```@example BjordalsbakkeModel parameters(circ_sys) ``` exception = UndefVarError: `circ_sys` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:199 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:210-219 ```@example BjordalsbakkeModel u0 = [ LV.p => MCFP LV.V => MCFP/Eₘᵢₙ Csa.p => MCFP Csa.V => MCFP*C_sa Csv.p => MCFP Csv.V => MCFP*C_sv ] ``` exception = UndefVarError: `Csv` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:211 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:229-231 ```@example BjordalsbakkeModel prob = ODEProblem(circ_sys, u0, tspan) ``` exception = UndefVarError: `circ_sys` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:230 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Documentation: ../../../.julia/packages/Documenter/nQAq5/src/utilities/utilities.jl#L44
failed to run `@example` block in src/examples/BjordalsbakkeModel.md:237-240 ```@example BjordalsbakkeModel sol = solve(prob, Vern7(), reltol=1e-12, abstol=1e-12); nothing #hide ``` exception = UndefVarError: `prob` not defined Stacktrace: [1] top-level scope @ BjordalsbakkeModel.md:238 [2] eval @ ./boot.jl:370 [inlined] [3] #54 @ ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:738 [inlined] [4] cd(f::Documenter.var"#54#56"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#53#55"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:737 [6] (::IOCapture.var"#3#5"{DataType, Documenter.var"#53#55"{Documenter.Page, Module, Expr}, Task, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:119 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:514 [8] with_logger @ ./logging.jl:626 [inlined] [9] capture(f::Documenter.var"#53#55"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool) @ IOCapture ~/.julia/packages/IOCapture/8Uj7o/src/IOCapture.jl:116 [10] runner(#unused#::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/nQAq5/src/expander_pipeline.jl:736
Julia 1.8 - ubuntu-latest - x64 - pull_request
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia 1.9 - ubuntu-latest - x64 - pull_request
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia nightly - ubuntu-latest - x64 - pull_request
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Documentation
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/