An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.
If you use the SpaceMarkers software please cite:
Atul Deshpande, Melanie Loth, et al., Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces. Cell Systems, April 2023. https://doi.org/10.1016/j.cels.2023.03.004
You can install the latest Bioconductor release from SpaceMarkers using the code below.
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SpaceMarkers")
You can install the development version of SpaceMarkers directly from the Github source.
install.packages("remotes")
remotes::install_github("DeshpandeLab/SpaceMarkers", dependencies = TRUE, build_vignettes = TRUE)