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Deshpande Lab

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  1. SpaceMarkers SpaceMarkers Public

    An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.

    HTML 4 4

  2. SpaceMarkers-paper SpaceMarkers-paper Public

    Scripts used for data analaysis in the manuscript

    Jupyter Notebook 1 1

  3. SINGE SINGE Public

    Forked from gitter-lab/SINGE

    Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

    MATLAB

  4. CoGAPS CoGAPS Public

    Forked from FertigLab/CoGAPS

    Bayesian MCMC matrix factorization algorithm

    C++

  5. btc-scrna-pipeline btc-scrna-pipeline Public

    Forked from break-through-cancer/btc-scrna-pipeline

    A Nextflow pipeline for single-cell RNA-Seq dataset

    Nextflow

  6. btc-sc-containers btc-sc-containers Public

    Forked from WangLab-ComputationalBiology/btc-sc-containers

    A repository containing all Dockerfile related to the single-cell pipeline

    Dockerfile

Repositories

Showing 10 of 17 repositories
  • SpaceMarkers Public

    An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics.

    DeshpandeLab/SpaceMarkers’s past year of commit activity
    HTML 4 4 7 (2 issues need help) 1 Updated Oct 24, 2024
  • data-and-scripts Public
    DeshpandeLab/data-and-scripts’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 4, 2024
  • webatlas-pipeline Public Forked from haniffalab/webatlas-pipeline

    A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas

    DeshpandeLab/webatlas-pipeline’s past year of commit activity
    Python 0 MIT 8 0 0 Updated Aug 15, 2024
  • SINGE Public Forked from gitter-lab/SINGE

    Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

    DeshpandeLab/SINGE’s past year of commit activity
    MATLAB 0 MIT 6 0 0 Updated Jun 14, 2024
  • btc-spatial-pipelines Public Forked from break-through-cancer/btc-spatial-pipelines

    Nextflow spatial pipelines (for Spatial Transcriptomics, IMC, etc.)

    DeshpandeLab/btc-spatial-pipelines’s past year of commit activity
    Groovy 0 MIT 1 0 0 Updated May 7, 2024
  • CoGAPS Public Forked from FertigLab/CoGAPS

    Bayesian MCMC matrix factorization algorithm

    DeshpandeLab/CoGAPS’s past year of commit activity
    C++ 0 BSD-3-Clause 18 0 0 Updated Apr 23, 2024
  • nf_pymc Public Forked from pymc-devs/pymc

    Bayesian Modeling and Probabilistic Programming in Python

    DeshpandeLab/nf_pymc’s past year of commit activity
    Python 0 2,051 0 0 Updated Feb 13, 2024
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    DeshpandeLab/configs’s past year of commit activity
    Nextflow 0 MIT 271 0 0 Updated Nov 21, 2023
  • py-utils Public
    DeshpandeLab/py-utils’s past year of commit activity
    0 0 0 0 Updated Oct 9, 2023
  • SpaceMarkers-paper Public

    Scripts used for data analaysis in the manuscript

    DeshpandeLab/SpaceMarkers-paper’s past year of commit activity
    Jupyter Notebook 1 1 1 0 Updated Oct 4, 2023
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