Update run.py

zarp/snakemake/run.py

@@ -1,5 +1,5 @@
 """Module for executing Snakemake workflows."""
-import os
+
 import logging
 from pathlib import Path
 import subprocess
@@ -52,10 +52,7 @@ def compile_command(self, snakefile: Path) -> List[str]:
             str(self.exec_dir),
             str(self.run_config.working_directory),
             str(self.run_config.zarp_directory),
-            str(os.environ.get("TMP")),
-            str(os.environ.get("TMPDIR")),
         ]
-        bind_paths = [item for item in bind_paths if item is not None]
         if self.bind_paths is not None:
             bind_paths.extend([str(path) for path in self.bind_paths])
         bind_paths_arg: str = ",".join(bind_paths)