fix(htsinfer): set Singularity bind args for Conda (#86) #21

	name: docs

	on:
	push:
	branches: [main, dev]
	workflow_dispatch:

	jobs:

	docs:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}

	steps:
	- name: check out repository
	uses: actions/checkout@v3

	- name: set up Conda/Mamba
	uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: "3.10"
	mamba-version: "*"
	auto-update-conda: true
	activate-environment: zarp-cli
	environment-file: install/environment.dev.root.yml
	auto-activate-base: false

	- name: display environment info
	run: \|
	conda info -a
	conda list

	- name: cache build artifacts
	uses: actions/cache@v3
	with:
	key: ${{ github.ref }}
	path: .cache

	- name: install doc requirements
	run: pip install -r docs/requirements.txt

	- name: create markdown documents
	run: \|
	lazydocs \
	--no-watermark \
	--output-path="./docs/docstring" \
	--overview-file="README.md" \
	--src-base-url="https://github.com/zavolanlab/zarp-cli/blob/dev/" \
	--validate \
	zarp

	- name: publish docs
	run: mkdocs gh-deploy --force --clean --verbose

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