Kojak to Proxl XML Converter

Use this program to convert the results of a Kojak (and optionally Percolator) cross-linking analysis to Proxl XML suitable for import into the proxl web application.

How To Run

1. Download the latest release.
2. Run the program java -jar kojak2ProxlXML.jar with no arguments to see the possible parameters.
3. Run the program, e.g., java -jar kojak2ProxlXML.jar -k ./kojak-output -c ./kojak.conf -l dss -o ./output.proxl.xml

In the above example, output.proxl.xml will be created and be suitable for import into proxl.

For more information on importing data into Proxl, please see the Proxl Import Documentation.

More Information About Proxl

For more information about Proxl, visit http://proxl-ms.org/.