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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 18

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 9 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 15

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 4

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 5 7

Repositories

Showing 10 of 79 repositories
  • baton Public

    iRODS client programs and API

    wtsi-npg/baton’s past year of commit activity
    C 19 GPL-2.0 19 11 0 Updated Sep 27, 2024
  • samtools_container Public

    Scripts to create a docker container for samtools

    wtsi-npg/samtools_container’s past year of commit activity
    Shell 1 7 3 0 Updated Sep 25, 2024
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python’s past year of commit activity
    Python 1 GPL-3.0 7 1 1 Updated Sep 24, 2024
  • npg-python-lib Public

    A library of Python functions and classes common to NPG applications

    wtsi-npg/npg-python-lib’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Sep 24, 2024
  • irods-metadata Public

    Description of a subset of metadata used in WTSI iRODS

    wtsi-npg/irods-metadata’s past year of commit activity
    2 2 0 0 Updated Sep 24, 2024
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    wtsi-npg/npg_irods’s past year of commit activity
    Perl 2 GPL-3.0 17 17 2 Updated Sep 24, 2024
  • npg_notifications Public
    wtsi-npg/npg_notifications’s past year of commit activity
    Python 0 2 1 0 Updated Sep 23, 2024
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan’s past year of commit activity
    Python 1 GPL-3.0 5 1 0 Updated Sep 20, 2024
  • containers Public

    Singularity and Docker material

    wtsi-npg/containers’s past year of commit activity
    Dockerfile 1 6 8 0 Updated Sep 16, 2024
  • irods_development_environment Public Forked from irods/irods_development_environment
    wtsi-npg/irods_development_environment’s past year of commit activity
    Dockerfile 0 BSD-3-Clause 11 0 0 Updated Sep 13, 2024
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