Metagenomic Discovery of CRISPR-Associated Transposons

James R. Rybarski, Kuang Hu, Alexis Hill, Claus O. Wilke, Ilya J. Finkelstein

This repository contains analysis scripts and processed data for the project. It is structured as follows:

• data/: raw data (excludes large datafiles assembled during metagenomic analysis)
• final_sequences/: FASTA files, Genbank files, and CSVs for each of the CASTs described in the manuscript
• src/: scripts for data processing
• output/: outputs such as pre-processed data that are ready for analysis, as well as final analyses used in figures