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Butterfly
Butterfly
 
 
bash_scripts
bash_scripts
 
 
tutorial_dataset
tutorial_dataset
 
 
tutorial_original_paper
tutorial_original_paper
 
 
Aldabra_P_T_U.ipynb
Aldabra_P_T_U.ipynb
 
 
Aldabra_P_T_U_single.ipynb
Aldabra_P_T_U_single.ipynb
 
 
Aldabra_P_T_U_single_tailoredforSPARK.ipynb
Aldabra_P_T_U_single_tailoredforSPARK.ipynb
 
 
Aldabra_P_T_U_single_v2.ipynb
Aldabra_P_T_U_single_v2.ipynb
 
 
Aldabra_P_T_U_systematic.ipynb
Aldabra_P_T_U_systematic.ipynb
 
 
PCA_paretoplot_v3.png
PCA_paretoplot_v3.png
 
 
PCA_tSNE_UMAP_top15PCs.jpeg
PCA_tSNE_UMAP_top15PCs.jpeg
 
 
PCA_tSNE_UMAP_top15PCs_v3.png
PCA_tSNE_UMAP_top15PCs_v3.png
 
 
PCA_tSNE_UMAP_top15PCs_v3_newclusters.png
PCA_tSNE_UMAP_top15PCs_v3_newclusters.png
 
 
README.md
README.md
 
 
Relatedness_4plots_xlim0.png
Relatedness_4plots_xlim0.png
 
 
Relatedness_4plots_xlim0_05.png
Relatedness_4plots_xlim0_05.png
 
 
Relatedness_Heatmap_sortedbyclust.png
Relatedness_Heatmap_sortedbyclust.png
 
 
Relatedness_Heatmap_sortedbynewclusters79.png
Relatedness_Heatmap_sortedbynewclusters79.png
 
 
Relatedness_Matrix.ipynb
Relatedness_Matrix.ipynb
 
 
Relatedness_Matrix_v2.ipynb
Relatedness_Matrix_v2.ipynb
 
 
Relatedness_plots.ipynb
Relatedness_plots.ipynb
 
 
Tutorial_Dataset_tSNE_UMAP_plots.ipynb
Tutorial_Dataset_tSNE_UMAP_plots.ipynb
 
 
default.distance
default.distance
 
 
forTutorialDataset.ipynb
forTutorialDataset.ipynb
 
 
mm1_20_ld_nopara_mmq30_maf05.xls
mm1_20_ld_nopara_mmq30_maf05.xls
 
 
relatedness_mm1_20_ID_nopara_mmq30.xls
relatedness_mm1_20_ID_nopara_mmq30.xls
 
 
sample_info.txt
sample_info.txt
 
 
sample_key_tsneguided.txt
sample_key_tsneguided.txt
 
 
tSNE_with_Samplenametexts_v3_newclusters.png
tSNE_with_Samplenametexts_v3_newclusters.png
 
 

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AGT_Population

PCA - tSNE - UMAP plots

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PCA - tSNE - UMAP plots

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