Microbiome of kids with T1D and obesity Seed Grant

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Primary Jupyter notebook analyses:

Metagenomics

• shotgun/analyze_shotgun.ipynb
• shogun_function/analyze_woltka_profile.ipynb

Metagenomics functional profile

• shogun_function/woltka_functional_profiling.ipynb
• shogun_function/Analyze_Metacyc.ipynb

Metabolomics

• metabolomics_new_tables.ipynb