Implement refactored Nextflow test workflows #62
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nwiltsie
requested review from
tyamaguchi-ucla,
yashpatel6 and
Faizal-Eeman
as code owners
yashpatel6
reviewed
Apr 11, 2024
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Description
This incorporates the new testing workflows implemented in uclahs-cds/tool-Nextflow-action#33.
Once this PR is merged, the workflow mentioned in #61 should be re-enabled.
Checklist
I have read the code review guidelines and the code review best practice on GitHub check-list.
I have reviewed the Nextflow pipeline standards.
The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
I have set up or verified the branch protection rule following the github standards before opening this pull request.
I have added my name to the contributors listings in the
manifestblock in thenextflow.configas part of this pull request, am listedalready, or do not wish to be listed. (This acknowledgement is optional.)
I have added the changes included in this pull request to the
CHANGELOG.mdunder the next release version or unreleased, and updated the date.I have updated the version number in the
metadata.yamlandmanifestblock of thenextflow.configfile following semver, or the version number has already been updated. (Leave it unchecked if you are unsure about new version number and discuss it with the infrastructure team in this PR.)I have tested the pipeline using NFTest, or I have justified why I did not need to run NFTest above.