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Issues: uclahs-cds/pipeline-align-DNA

Input csv fields: redundancy ok?
#143 opened Oct 22, 2021 by alkaZeltser
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Issues list

Config file generation script is out of date for v9.0.0 bug Something isn't working documentation Improvements or additions to documentation
#276 opened Aug 9, 2023 by j2salmingo
Adding fastp as a configurable option enhancement New feature or request
#272 opened Jul 5, 2023 by raagagrawal
Process inclusion warnings
#251 opened Dec 1, 2022 by yashpatel6
Change check_512sum to use PipeVal enhancement New feature or request
#244 opened Sep 28, 2022 by jarbet
Run MarkDuplicatesSpark by library enhancement New feature or request
#234 opened Aug 8, 2022 by tyamaguchi-ucla
Parameterize --VALIDATION_STRINGENCY enhancement New feature or request Task
#224 opened Jul 24, 2022 by tyamaguchi-ucla
GATK's MarkDuplicatesSpark outputs and empty bam file for an ICGC cohort of WGS FASTQs blocked Work on this issue cannot proceed because another issue must be closed first bug Something isn't working
#223 opened Jul 23, 2022 by Alfredo-Enrique
Input csv fields: redundancy ok? question Further information is requested
#143 opened Oct 22, 2021 by alkaZeltser
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