Merge pull request #195 from uclahs-cds/danknight-man-fixes

Manual fixes for CRAN

NEWS.md

@@ -10,7 +10,11 @@
 ## Changed
 
 - Improved documentation for type parameter in `create.scatterplot`
+
+
+## Fixed
 - Fix typo in README
+- Update package manual for CRAN standards
 
 # BoutrosLab.plotting.general 7.1.0 (2023-10-26)
 
@@ -2003,7 +2007,7 @@ BoutrosLab.plotting.general 5.3.7
 - `create.heatmap`: Use grobPack() fontfamily specification to avoid unknown Arial font specification
 - `create.dotmap`: Changed yaxis label default to not be bold
 - Legend.grob: Added parameters - 'layout', 'between.col', 'between.row' to allow user to specify layout for multiple legends and set empty space between rows/columns
-- Legend.grob: Changed titles in legend to use a text grob instead of draw.key
+- Legend.grob: Changed titles in legend to use a text grob instead of `draw.key`
 - `create.heatmap`: Added 'legend.layout', 'legend.between.col', and 'legend.between.row' parameters
 
 # BoutrosLab.plotting.general 3.5.4 (2012-11-02)
@@ -2067,7 +2071,7 @@ BoutrosLab.plotting.general 5.3.7
 ## Changed
 
 - `create.heatmap`: Added code to close devices opened by the grid::covertUnit function and remove Rplots.pdf files if necessary
-- Legend.grob: Added code to remove Rplots.pdf files created by the lattice::draw.key
+- Legend.grob: Added code to remove Rplots.pdf files created by the lattice::`draw.key`
 
 # BoutrosLab.plotting.general 3.4.0 (2012-09-12)
 
@@ -2088,7 +2092,7 @@ BoutrosLab.plotting.general 5.3.7
 
 ## Changed
 
-- Legend.grob: Added code to close extra device created by the draw.key()
+- Legend.grob: Added code to close extra device created by the `draw.key`()
 
 # BoutrosLab.plotting.general 3.3.5 (2012-08-29)
 

man/create.scatterplot.Rd

@@ -901,7 +901,8 @@ create.scatterplot(
     xlab.cex = 1.5,
     ylab.cex = 1.5,
     # To plot ROC curve, add "s" or "S" to type vector.
-    # "s" connects points with the vertical segment first. "S" connects points with the horizontal segment first.
+    # "s" connects points with the vertical segment first. 
+    # "S" connects points with the horizontal segment first.
     type = 's',
     lwd = 3,
     add.xyline = TRUE,

man/legend.grob.Rd

@@ -45,7 +45,7 @@ The 'colours' component is a vector of fill colours to be used for the rectangle
 }
 \value{Returns an grob representing the legend(s)}
 \author{Lauren Chong}
-\seealso{\code{\link{create.heatmap}}, \code{\link{draw.key}}, \code{\link{gpar}}}
+\seealso{\code{\link{create.heatmap}}, \code{\link[lattice]{draw.key}}, \code{\link{gpar}}}
 \section{Implementation}{
 This function was initially created to be called from \code{create.heatmap} to draw a covariate legend.\cr
 The decision to use a grob (grid graphical object) to represent the legend was made based on the format of the \code{levelplot} function in the \code{lattice} package.  Since the \code{legend} argument of the function requires grobs, it was easiest to create a grob to represent the legend and then, if necessary, add this to any existing grobs (dendrograms, etc.) in the \code{create.heatmap} function using a grid layout.\cr