-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #64 from uclahs-cds/nzeltser-cran-fixes
cran fixes attempt 2
- Loading branch information
Showing
3 changed files
with
17 additions
and
7 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
|
@@ -6,12 +6,14 @@ Authors@R: c( | |
person('Paul', 'Boutros', role = 'cre', email = '[email protected]'), | ||
person('Nicole', 'Zeltser', role = 'aut', comment = c(ORCID = '0000-0001-7246-2771')), | ||
person('Rachel', 'Dang', role = 'ctb')) | ||
Description: This tool is intended to simply and transparently parse | ||
genotype/dosage data from an input VCF, match genotype coordinates | ||
to the component SNPs of an existing polygenic score, and apply | ||
SNP weights to dosages to calculate a polygenic score for each | ||
individual in accordance with the additive weighted sum of dosages | ||
model. | ||
Description: Simple and transparent parsing of genotype/dosage data | ||
from an input Variant Call Format (VCF) file, matching of genotype | ||
coordinates to the component Single Nucleotide Polymorphisms (SNPs) | ||
of an existing polygenic score (PGS), and application of SNP weights | ||
to dosages for the calculation of a polygenic score for each individual | ||
in accordance with the additive weighted sum of dosages model. Methods | ||
are designed in reference to best practices described by | ||
Collister, Liu, and Clifton (2022) <doi:10.3389/fgene.2022.818574>. | ||
Depends: | ||
R (>= 4.2.0) | ||
Imports: | ||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters