Update image with R 4.4.0

[Faizal-Eeman]

Description

Update image to latest R v4.4.0.

Closes #5

Testing Results

Docker Image Testing

• I have tested the Docker image with the docker run command as described below.

My command:

docker run -it --rm -u $(id -u):$(id -g) bpg:7.1.0 bash

groups: cannot find name for group ID 347200513
I have no name!@bafbdc733dc5:/$ 
I have no name!@bafbdc733dc5:/$ 
I have no name!@bafbdc733dc5:/$ R

R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 
> library("BoutrosLab.plotting.general")
Loading required package: lattice
Loading required package: latticeExtra
Loading required package: cluster
Loading required package: hexbin
Loading required package: grid

Attaching package: 'BoutrosLab.plotting.general'

The following object is masked from 'package:stats':

    dist

Formatting

• I have read the code review guidelines and the code review best practice on GitHub check-list.

• The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].

• I have set up or verified the branch protection rule following the github standards before opening this pull request.

File Updates

• I have ensured that the version number update follows the versioning standards.

• I have updated the version number in the Dockerfile, README.md and metadata.yaml files.

• I have updated the dependencies and added my name to the maintainer list in the Dockerfile.

• I have updated the feature changes in the README.md (optional).

• I have added the changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.

GitHub Packages Auto Build Rules

• I have not manually pushed this Docker image to the uclahs-cds container registry (ghcr.io/uclahs-cds) on GitHub.

• I have updated the image_name in the metadata.yaml which is required by GitHub action to automatically build and push the image.

[wiz-inc-8da00b022c]

Wiz Scan Summary

IaC Misconfigurations
Vulnerabilities
Sensitive Data
Total
Secrets

[tyamaguchi-ucla]

It looks like our latest is 7.1.1 https://github.com/uclahs-cds/package-BoutrosLab-plotting-general/blob/699233d7e100ee55e52ea51ee713259906e8d809/NEWS#L1

[Faizal-Eeman]

@tyamaguchi-ucla 7.1.0 is the official release available on GitHub and CRAN. Based on my discussion with Dan 7.1.1 is not out yet as a release.

[tyamaguchi-ucla]

Is there any reason not to release it even though the version bump has occurred?

[Faizal-Eeman]

@dan-knight can provide some insight here

[nwiltsie]

We should verify that GPG key fingerprint - that involves setting pipefail in the shell and then confirming that the fingerprint appears in the gpg --show-keys output.

[Faizal-Eeman]

@nwiltsie I've added your suggestions. Lmk if I missed anything!

[yashpatel6]

Generally looks ok, a couple of comments:

[yashpatel6]

Looks good! @nwiltsie anything else to add?

[tyamaguchi-ucla]

I don't mean to block this PR and feel free to merge this into the main if we need more work to release BPG 7.1.1.

[Faizal-Eeman]

I don't mean to block this PR and feel free to merge this into the main if we need more work to release BPG 7.1.1.

Thanks Taka. I'll update BPG as soon as 7.1.1 is out.