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Tool to compute tracking metrics #11

Merged
merged 10 commits into from
Apr 4, 2024
Merged

Tool to compute tracking metrics #11

merged 10 commits into from
Apr 4, 2024

Commits on Apr 2, 2024

  1. Panel UI to select a metrics.

    @tinevez
    tinevez committed Apr 2, 2024
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  2. WIP: A panel UI for the plugin that computes metrics values.

    @tinevez
    tinevez committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. Use the metric chooser panel also in the helper launcher GUI.

    @tinevez
    tinevez committed Apr 3, 2024
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  2. Don't crash if we do not provide an image when running metrics. 

    Could be improved. A default string could be used instead of the empty
string because this will be used to generated the CSV results file.
    @tinevez
    tinevez committed Apr 3, 2024
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  3. Ground truth input for SPT metrics can be a TrackMate file.

    @tinevez
    tinevez committed Apr 3, 2024
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  4. First version of the metric computation GUI. 

    A bit clumsy and the retrofit really shows.
    @tinevez
    tinevez committed Apr 3, 2024
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Commits on Apr 4, 2024

  1. Rework metric computation in the runners. 

    When used in the Helper:

- An abstract method does the computation and return the metrics.
- A method in the mother class calls this method and takes care of
saving the results to a CSV file.

This diminishes slightly duplicated code, allows lowering visibility
of some methods in MetricsRunner,  but will also allow using the
runners just to compute metrics oustide of the helper.

Also for SPT runner: the units is specified at construction. Nevermind
if we cannot get it right, it is just for display.
    @tinevez
    tinevez committed Apr 4, 2024
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  2. Working metric computation tool.

    @tinevez
    tinevez committed Apr 4, 2024
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  3. Make a IJ1 plugin for the metrics computation UI.

    @tinevez
    tinevez committed Apr 4, 2024
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  4. Launch Helper GUI from the EDT.

    @tinevez
    tinevez committed Apr 4, 2024
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