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Brmsfit method #14

Merged
merged 38 commits into from
Mar 31, 2024
Merged

Brmsfit method #14

merged 38 commits into from
Mar 31, 2024

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topipa
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@topipa topipa commented Mar 25, 2024

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topipa and others added 30 commits August 27, 2023 18:33
* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* fix deprecation warning (#11)

* add return_k = TRUE for pareto smoothing

* change jacobian_adjustment to jacobian (deprecation warning)

---------

Co-authored-by: n-kall <[email protected]>

---------

Co-authored-by: n-kall <[email protected]>
* add return_k = TRUE for pareto smoothing

* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* change jacobian_adjustment to jacobian (deprecation warning)

* Posterior updates (#7)

* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* fix deprecation warning (#11)

* add return_k = TRUE for pareto smoothing

* change jacobian_adjustment to jacobian (deprecation warning)

---------

Co-authored-by: n-kall <[email protected]>

---------

Co-authored-by: n-kall <[email protected]>

* updates to constrain/unconstrain methods

* fixes to brmsfit method

* docs update

* fix namespace warnings

* fix namespace issues

* add dummy sampler_params function for brmsfit

---------

Co-authored-by: n-kall <[email protected]>
Co-authored-by: Topi Paananen <[email protected]>
@topipa topipa marked this pull request as ready for review March 31, 2024 08:43
@topipa topipa merged commit b40fdc3 into main Mar 31, 2024
4 of 8 checks passed
@topipa topipa deleted the brmsfit-method branch March 31, 2024 08:43
n-kall added a commit to n-kall/iwmm that referenced this pull request Apr 10, 2024
* add more methods

* add basic brmsfit method

* small changes to brmsfit method

* add print function

* small updates

* add return_k = TRUE for pareto smoothing

* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* change jacobian_adjustment to jacobian (deprecation warning)

* Posterior updates (#7)

* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* fix deprecation warning (topipa#11)

* add return_k = TRUE for pareto smoothing

* change jacobian_adjustment to jacobian (deprecation warning)

---------



---------



* updates to constrain/unconstrain methods

* fixes to brmsfit method

* docs update

* fix namespace warnings

* fix namespace issues

* add dummy sampler_params function for brmsfit

* Brmsfit method (topipa#12)

* add return_k = TRUE for pareto smoothing

* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* change jacobian_adjustment to jacobian (deprecation warning)

* Posterior updates (#7)

* address changes to unconstrain_draws in cmdstanr, posterior pareto-k

* use posterior github version in workflow

* fix workflow deps

* fix deprecation warning (topipa#11)

* add return_k = TRUE for pareto smoothing

* change jacobian_adjustment to jacobian (deprecation warning)

---------



---------



* updates to constrain/unconstrain methods

* fixes to brmsfit method

* docs update

* fix namespace warnings

* fix namespace issues

* add dummy sampler_params function for brmsfit

---------




* run styler

* run styler again

* add return statement

* no parallel tests by default

* document

* remove unneeded import

* clean blank lines

* name log weights appropriately

* name log weights

* document

---------

Co-authored-by: Topi Paananen <[email protected]>
Co-authored-by: n-kall <[email protected]>
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2 participants