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stat_smooth() drops failed groups #5371

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Oct 2, 2023
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3 changes: 3 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
# ggplot2 (development version)

* Failing to fit or predict in `stat_smooth()` now gives a warning and omits
the failed group, instead of throwing an error (@teunbrand, #5352).

* Nicer error messages for xlim/ylim arguments in coord-* functions
(@92amartins, #4601, #5297).

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27 changes: 19 additions & 8 deletions R/stat-smooth.R
Original file line number Diff line number Diff line change
Expand Up @@ -171,14 +171,25 @@ StatSmooth <- ggproto("StatSmooth", Stat,
method.args$method <- "REML"
}

model <- inject(method(
formula,
data = data,
weights = weight,
!!!method.args
))

prediction <- predictdf(model, xseq, se, level)
prediction <- tryCatch(
{
model <- inject(method(
formula,
data = data,
weights = weight,
!!!method.args
))
predictdf(model, xseq, se, level)
},
error = function(cnd) {
cli::cli_warn("Failed to fit group {data$group[1]}.", parent = cnd)
NULL
}
)
if (is.null(prediction)) {
return(NULL)
}

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prediction$flipped_aes <- flipped_aes
flip_data(prediction, flipped_aes)
},
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16 changes: 16 additions & 0 deletions tests/testthat/test-geom-smooth.R
Original file line number Diff line number Diff line change
Expand Up @@ -77,6 +77,22 @@ test_that("default smoothing methods for small and large data sets work", {
expect_equal(plot_data$y, as.numeric(out))
})

test_that("geom_smooth() works when one group fails", {
# Group A fails, B succeeds
df <- data_frame0(
x = c(1, 2, 1, 2, 3),
y = c(1, 2, 3, 2, 1),
g = rep(c("A", "B"), 2:3)
)
p <- ggplot(df, aes(x, y, group = g)) +
geom_smooth(method = "loess", formula = y ~ x)

suppressWarnings(
expect_warning(ld <- layer_data(p), "Failed to fit group 1")
)
expect_equal(unique(ld$group), 2)
expect_gte(nrow(ld), 2)
})

# Visual tests ------------------------------------------------------------

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8 changes: 2 additions & 6 deletions tests/testthat/test-stats.R
Original file line number Diff line number Diff line change
Expand Up @@ -5,13 +5,9 @@ test_that("plot succeeds even if some computation fails", {
b1 <- ggplot_build(p1)
expect_equal(length(b1$data), 1)

p2 <- p1 + geom_smooth()
p2 <- p1 + stat_summary(fun = function(x) stop("Failed computation"))

# TODO: These multiple warnings should be summarized nicely. Until this gets
# fixed, this test ignores all the following errors than the first one.
suppressWarnings(
expect_warning(b2 <- ggplot_build(p2), "Computation failed")
)
expect_warning(b2 <- ggplot_build(p2), "Computation failed")
expect_equal(length(b2$data), 2)
})

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