Rc 1.1.0 (#1342)

* polish news * community.rstudio -> forum.posit * devtools::build_readme() * remove Remotes * update news * make recipes_ptype() return NULL for old recipes * run revdepcheck * add skip_on_cran * version bump * "Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages." --------- Co-authored-by: ‘topepo’ <‘[email protected]’>
tidymodels · Jul 5, 2024 · a69b49c · a69b49c
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: recipes
 Title: Preprocessing and Feature Engineering Steps for Modeling
-Version: 1.0.10.9000
+Version: 1.1.0
 Authors@R: c(
     person("Max", "Kuhn", , "[email protected]", role = c("aut", "cre")),
     person("Hadley", "Wickham", , "[email protected]", role = "aut"),
@@ -26,7 +26,7 @@ Imports:
     generics (>= 0.1.2),
     glue,
     gower,
-    hardhat (>= 1.3.1.9000),
+    hardhat (>= 1.4.0),
     ipred (>= 0.9-12),
     lifecycle (>= 1.0.3),
     lubridate (>= 1.8.0),
@@ -71,5 +71,3 @@ Config/testthat/edition: 3
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.1
-Remotes: 
-    tidymodels/hardhat
diff --git a/NEWS.md b/NEWS.md
@@ -1,46 +1,54 @@
-# recipes (development version)
+# recipes 1.1.0
 
-* New `extract_fit_time()` method has been added that returns the time it took to train the recipe. (#1071)
+## Improvements
 
-* `step_spline_b()`, `step_spline_convex()`, `step_spline_monotone()`, and `step_spline_nonnegative()` now throws informative errors if the`degree`, `deg_free`, and `complete_set` arguments causes an error. (#1170)
+* Improved error message for misspelled argument in step functions. (#1318)
 
-* Developer helper function `recipes_ptype()` has been added, returning expected input data for `prep()` and `bake()` for a given recipe object. (#1329)
+* `recipe()` can now take data.frames with list-columns or sf data.frames as input to `data`. (#1283)
 
-* Developer helper function `recipes_ptype_validate()` has been added, to validate new data is compatible with recipe ptype. (#793)
+* `recipe()` will now show better error when columns are misspelled in formula (#1283).
 
-* The `prefix` argument of `step_dummy_multi_choice()` is not properly documented. (#1298)
+* `add_role()` now errors if a column would simultaneously have roles `"outcome"` and `"predictor"`. (#935)
 
-* `step_dummy()` now gives an informative error on attempt to generate too many columns to fit in memory. (#828)
+* `prep()` will now error if the ptype of the data doesn't match which was used to define the recipe. (#793)
 
-* `NA` levels in factors aren't dropped when passed to `recipe()`. (#1291)
+* Added more documentation in `?selections` about how `tidyselect::everything()` works in recipes. (#1259)
 
-* `recipe()` no longer crashes when given long formula expression (#1283).
+* New `extract_fit_time()` method has been added that returns the time it took to train the recipe. (#1071)
 
-* `step_interact()` now gives better error if `terms` isn't a formula. (#1299)
+* `step_spline_b()`, `step_spline_convex()`, `step_spline_monotone()`, and `step_spline_nonnegative()` now throws informative errors if the`degree`, `deg_free`, and `complete_set` arguments causes an error. (#1170)
 
-* `recipe()` will now show better error when columns are misspelled in formula (#1283).
+* `step_mutate()` gained `.pkgs` argument to specify what packages need to be loaded for step to work. (#1282)
 
-* Fixed bug in `step_ns()` and `step_bs()` where `knots` field in `options` argument wasn't correctly used. (#1297)
+* `step_interact()` now gives better error if `terms` isn't a formula. (#1299)
 
-* `add_role()` now errors if a column would simultaneously have roles `"outcome"` and `"predictor"`. (#935)
+* The `prefix` argument of `step_dummy_multi_choice()` is now properly documented. (#1298)
 
 * Significant speedup in `step_dummy()` when applied to many columns. (#1305)
 
-* Bug fixed in `step_interact()` where long formulas were used. (#1231, #1289)
-
-* `recipe()` can now take data.frames with list-columns or sf data.frames as input to `data`. (#1283)
+* `step_dummy()` now gives an informative error on attempt to generate too many columns to fit in memory. (#828)
 
 * `step_dummy()` and `step_unknown()` now throw more informative warnings for unseen levels. (#450)
 
 * `step_dummy()` now throws more informative warnings for `NA` values. (#450)
 
+## Bug Fixes
+
+* `NA` levels in factors aren't dropped when passed to `recipe()`. (#1291)
+
+* `recipe()` no longer crashes when given long formula expression (#1283).
+
+* Fixed bug in `step_ns()` and `step_bs()` where `knots` field in `options` argument wasn't correctly used. (#1297)
+
+* Bug fixed in `step_interact()` where long formulas were used. (#1231, #1289)
+
 * Fixed documentation mistake where default value of `keep_original_cols` argument were wrong. (#1314)
 
-* `step_mutate()` gained `.pkgs` argument to specify what packages need to be loaded for step to work. (#1282)
+## Developer
 
-* Added more documentation in `?selections` about how `tidyselect::everything()` works in recipes. (#1259)
+* Developer helper function `recipes_ptype()` has been added, returning expected input data for `prep()` and `bake()` for a given recipe object. (#1329)
 
-* Improved error message for misspelled argument in step functions. (#1318)
+* Developer helper function `recipes_ptype_validate()` has been added, to validate new data is compatible with recipe ptype. (#793)
 
 * Developer helper functions `recipes_names_predictors()` and `recipes_names_outcomes()` have been added to aid variable selection in steps. (#1026)
 

diff --git a/R/ptype.R b/R/ptype.R
@@ -40,6 +40,8 @@
 #' with `update_role_requirements()`, and `recipes_ptype()` respects those 
 #' changes.
 #' 
+#' `recipes_ptype()` returns `NULL` on recipes created prior to version 1.1.0.
+#' 
 #' Note that the order of the columns aren't guaranteed to align with
 #' `data_ptype` as the data internally is ordered according to roles.
 #' 
@@ -84,13 +86,9 @@
 recipes_ptype <- function(x, ..., stage = "prep") {
   check_dots_empty0(...)
 
+  # recipe created prior to 1.1.0
   if (is.null(x$ptype)) {
-   cli::cli_abort(
-      c(
-        x = "Doesn't work on recipes created prior to version 1.1.0.",
-        i = "Please recreate recipe."
-      )
-    )
+    return(NULL)
   }
 
   ptype <- x$ptype
@@ -112,6 +110,15 @@ recipes_ptype <- function(x, ..., stage = "prep") {
   ptype
 }
 
+
+long_function_name <- function(x,
+                               ...,
+                               verbose = FALSE) {
+  x
+}
+
+
+
 #' Validate prototype of recipe object
 #'
 #' This helper function validates a dataframe against the ptype of a recipe.
@@ -143,6 +150,12 @@ recipes_ptype_validate <- function(x,
                                    stage = "prep", 
                                    call = rlang::caller_env()) {
   old_ptype <- recipes_ptype(x, stage = stage)
+
+  # recipe created prior to 1.1.0
+  if (is.null(old_ptype)) {
+    return(invisible())
+  }
+
   col_names <- names(old_ptype)
 
   new_ptype <- vctrs::vec_ptype(new_data)

diff --git a/R/recipe.R b/R/recipe.R
@@ -596,7 +596,7 @@ bake <- function(object, ...) {
 #' @param ... One or more selector functions to choose which variables will be
 #'   returned by the function. See [selections()] for more details.
 #'   If no selectors are given, the default is to use
-#'   [everything()].
+#'   [dplyr::everything()].
 #' @param composition Either "tibble", "matrix", "data.frame", or
 #'  "dgCMatrix" for the format of the processed data set. Note that
 #'  all computations during the baking process are done in a

diff --git a/README.Rmd b/README.Rmd
@@ -54,7 +54,7 @@ pak::pak("tidymodels/recipes")
 
 ## Contributing
 
-- For questions and discussions about tidymodels packages, modeling, and machine learning, please [post on RStudio Community](https://community.rstudio.com/c/ml/15).
+- For questions and discussions about tidymodels packages, modeling, and machine learning, please [post on RStudio Community](https://forum.posit.co/c/ml/15).
 
 - If you think you have encountered a bug, please [submit an issue](https://github.com/tidymodels/recipes/issues).
 

diff --git a/README.md b/README.md
@@ -57,18 +57,18 @@ pak::pak("tidymodels/recipes")
 
 ## Contributing
 
--   For questions and discussions about tidymodels packages, modeling,
-    and machine learning, please [post on RStudio
-    Community](https://community.rstudio.com/c/ml/15).
+- For questions and discussions about tidymodels packages, modeling, and
+  machine learning, please [post on RStudio
+  Community](https://forum.posit.co/c/ml/15).
 
--   If you think you have encountered a bug, please [submit an
-    issue](https://github.com/tidymodels/recipes/issues).
+- If you think you have encountered a bug, please [submit an
+  issue](https://github.com/tidymodels/recipes/issues).
 
--   Either way, learn how to create and share a
-    [reprex](https://reprex.tidyverse.org/articles/articles/learn-reprex.html)
-    (a minimal, reproducible example), to clearly communicate about your
-    code.
+- Either way, learn how to create and share a
+  [reprex](https://reprex.tidyverse.org/articles/articles/learn-reprex.html)
+  (a minimal, reproducible example), to clearly communicate about your
+  code.
 
--   Check out further details on [contributing guidelines for tidymodels
-    packages](https://www.tidymodels.org/contribute/) and [how to get
-    help](https://www.tidymodels.org/help/).
+- Check out further details on [contributing guidelines for tidymodels
+  packages](https://www.tidymodels.org/contribute/) and [how to get
+  help](https://www.tidymodels.org/help/).
diff --git a/man/bake.Rd b/man/bake.Rd
diff --git a/man/juice.Rd b/man/juice.Rd
diff --git a/man/recipe.Rd b/man/recipe.Rd
diff --git a/man/recipes_ptype.Rd b/man/recipes_ptype.Rd
diff --git a/man/selections.Rd b/man/selections.Rd
diff --git a/man/step_bs.Rd b/man/step_bs.Rd
diff --git a/revdep/README.md b/revdep/README.md
@@ -2,68 +2,22 @@
 
 |field    |value                               |
 |:--------|:-----------------------------------|
-|version  |R version 4.3.2 (2023-10-31)        |
-|os       |macOS Sonoma 14.2.1                 |
+|version  |R version 4.4.0 (2024-04-24)        |
+|os       |macOS Sonoma 14.4.1                 |
 |system   |aarch64, darwin20                   |
-|ui       |RStudio                             |
+|ui       |X11                                 |
 |language |(EN)                                |
 |collate  |en_US.UTF-8                         |
 |ctype    |en_US.UTF-8                         |
 |tz       |America/Los_Angeles                 |
-|date     |2024-02-16                          |
-|rstudio  |2023.12.0+359 Ocean Storm (desktop) |
+|date     |2024-06-10                          |
 |pandoc   |2.17.1.1 @ /opt/homebrew/bin/pandoc |
 
 # Dependencies
 
-|package      |old        |new        |Δ  |
-|:------------|:----------|:----------|:--|
-|recipes      |1.0.9      |1.0.9.9000 |*  |
-|cli          |3.6.2      |3.6.2      |   |
-|clock        |0.7.0      |0.7.0      |   |
-|cpp11        |0.4.7      |0.4.7      |   |
-|data.table   |1.15.0     |1.15.0     |   |
-|diagram      |1.6.5      |1.6.5      |   |
-|digest       |0.6.34     |0.6.34     |   |
-|dplyr        |1.1.4      |1.1.4      |   |
-|ellipsis     |0.3.2      |0.3.2      |   |
-|fansi        |1.0.6      |1.0.6      |   |
-|future       |1.33.1     |1.33.1     |   |
-|future.apply |1.11.1     |1.11.1     |   |
-|generics     |0.1.3      |0.1.3      |   |
-|globals      |0.16.2     |0.16.2     |   |
-|glue         |1.7.0      |1.7.0      |   |
-|gower        |1.0.1      |1.0.1      |   |
-|hardhat      |1.3.1      |1.3.1      |   |
-|ipred        |0.9-14     |0.9-14     |   |
-|lava         |1.7.3      |1.7.3      |   |
-|lifecycle    |1.0.4      |1.0.4      |   |
-|listenv      |0.9.1      |0.9.1      |   |
-|lubridate    |1.9.3      |1.9.3      |   |
-|magrittr     |2.0.3      |2.0.3      |   |
-|numDeriv     |2016.8-1.1 |2016.8-1.1 |   |
-|parallelly   |1.36.0     |1.36.0     |   |
-|pillar       |1.9.0      |1.9.0      |   |
-|pkgconfig    |2.0.3      |2.0.3      |   |
-|prodlim      |2023.08.28 |2023.08.28 |   |
-|progressr    |0.14.0     |0.14.0     |   |
-|purrr        |1.0.2      |1.0.2      |   |
-|R6           |2.5.1      |2.5.1      |   |
-|Rcpp         |1.0.12     |1.0.12     |   |
-|rlang        |1.1.3      |1.1.3      |   |
-|shape        |1.4.6      |1.4.6      |   |
-|SQUAREM      |2021.1     |2021.1     |   |
-|stringi      |1.8.3      |1.8.3      |   |
-|stringr      |1.5.1      |1.5.1      |   |
-|tibble       |3.2.1      |3.2.1      |   |
-|tidyr        |1.3.1      |1.3.1      |   |
-|tidyselect   |1.2.0      |1.2.0      |   |
-|timechange   |0.3.0      |0.3.0      |   |
-|timeDate     |4032.109   |4032.109   |   |
-|tzdb         |0.4.0      |0.4.0      |   |
-|utf8         |1.2.4      |1.2.4      |   |
-|vctrs        |0.6.5      |0.6.5      |   |
-|withr        |3.0.0      |3.0.0      |   |
+|package |old    |new         |Δ  |
+|:-------|:------|:-----------|:--|
+|recipes |1.0.10 |1.0.10.9000 |*  |
 
 # Revdeps
 
@@ -74,3 +28,11 @@
 |D2MCS        |1.0.1   |1     |        |     |
 |hydrorecipes |0.0.3   |1     |        |     |
 
+## New problems (3)
+
+|package     |version |error  |warning |note |
+|:-----------|:-------|:------|:-------|:----|
+|[tidybins](problems.md#tidybins)|0.1.0   |__+1__ |        |2    |
+|[tidysdm](problems.md#tidysdm)|0.9.4   |__+1__ |        |     |
+|[viraldomain](problems.md#viraldomain)|0.0.3   |__+2__ |        |     |
+
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -2,11 +2,24 @@
 
 We checked 71 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 0 new problems
+ * We saw 3 new problems
  * We failed to check 2 packages
 
 Issues with CRAN packages are summarised below.
 
+### New problems
+(This reports the first line of each new failure)
+
+* tidybins
+  checking examples ... ERROR
+
+* tidysdm
+  checking tests ...
+
+* viraldomain
+  checking examples ... ERROR
+  checking tests ...
+
 ### Failed to check
 
 * D2MCS        (NA)