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Added a py.typed for type checkers #35
Commits on May 8, 2024
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Merge pull request hyperspy#3364 from ericpre/plot_roi_map_fix
Fix `hs.plot.plot_roi_map` when using `CircleROI` and improvements
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Co-authored-by: Jonas Lähnemann <[email protected]>
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Commits on May 13, 2024
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Bump softprops/action-gh-release from 2.0.4 to 2.0.5
Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2.0.4 to 2.0.5. - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](softprops/action-gh-release@9d7c94c...69320db) --- updated-dependencies: - dependency-name: softprops/action-gh-release dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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[pre-commit.ci] pre-commit autoupdate
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Commits on May 17, 2024
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Merge pull request hyperspy#3369 from hyperspy/pre-commit-ci-update-c…
…onfig [pre-commit.ci] pre-commit autoupdate
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Merge pull request hyperspy#3372 from hyperspy/dependabot/github_acti…
…ons/RELEASE_next_patch/softprops/action-gh-release-2.0.5 Bump softprops/action-gh-release from 2.0.4 to 2.0.5
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Commits on Jun 1, 2024
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Co-authored-by: Eric Prestat <[email protected]>
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Update hyperspy/tests/signals/test_2D.py
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Update hyperspy/tests/signals/test_2D.py
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Commits on Jun 3, 2024
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[pre-commit.ci] pre-commit autoupdate
updates: - [github.com/astral-sh/ruff-pre-commit: v0.4.4 → v0.4.7](astral-sh/ruff-pre-commit@v0.4.4...v0.4.7)
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Commits on Jun 5, 2024
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Update upcoming_changes/3384.bugfix.rst
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Merge branch 'BUGFIX_BSS_sig_mask' of https://github.com/francisco-dl…
…p/hyperspy into BUGFIX_BSS_sig_mask
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[pre-commit.ci] auto fixes from pre-commit.com hooks
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Merge pull request hyperspy#3384 from francisco-dlp/BUGFIX_BSS_sig_mask
Fix `mask` being replaced by the `blind_source_separation` method
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Merge branch 'BUGFIX_poisson_noise' of https://github.com/francisco-d…
…lp/hyperspy into BUGFIX_poisson_noise
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Merge pull request hyperspy#3379 from francisco-dlp/BUGFIX_poisson_noise
Fix `add_poissonian_noise` and `add_gaussian_noise` changing data object
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Co-authored-by: Carter Francis <[email protected]>
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Merge pull request hyperspy#3380 from ericpre/improve_Documentation_d…
…istributed_scheduler Improve documentation distributed scheduler
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Commits on Jun 6, 2024
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Merge pull request hyperspy#3377 from hyperspy/pre-commit-ci-update-c…
…onfig [pre-commit.ci] pre-commit autoupdate
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Merge pull request hyperspy#3366 from ericpre/avoid_importing_toolkit…
…_when_not_enabled Only import gui widget when the toolkit is enabled
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Update residual line when model line is changed.
Update residual line when model line is changed. hyperspy#3352
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Apply suggestions from code review
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self._connect_parameters2update_plot(self) should be called after plot_residual is created otherwise it will not update
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Add test for checking events connection and resetting plotting line w…
…hen closing model plot
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Merge pull request hyperspy#3355 from HanHsuanWu/RELEASE_next_patch
Update residual line when model line is changed.
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Commits on Jun 8, 2024
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Fix import error of
VisibleDeprecationWarning
from numpy: use hyper……spy exceptions instead of numpy exceptions
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Update GitHub CI matrix following changes to macos runner: latest is …
…now macos-14 with arm64
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Commits on Jun 24, 2024
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Merge pull request hyperspy#3388 from ericpre/fix_expression
Fix gradients in some expression based components
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Bump softprops/action-gh-release from 2.0.5 to 2.0.6
Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2.0.5 to 2.0.6. - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](softprops/action-gh-release@69320db...a74c6b7) --- updated-dependencies: - dependency-name: softprops/action-gh-release dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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[pre-commit.ci] pre-commit autoupdate
updates: - [github.com/astral-sh/ruff-pre-commit: v0.4.7 → v0.4.10](astral-sh/ruff-pre-commit@v0.4.7...v0.4.10)
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Commits on Jun 25, 2024
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Merge pull request hyperspy#3387 from hyperspy/pre-commit-ci-update-c…
…onfig [pre-commit.ci] pre-commit autoupdate
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Commits on Jul 1, 2024
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Merge pull request hyperspy#3392 from hyperspy/dependabot/github_acti…
…ons/RELEASE_next_patch/softprops/action-gh-release-2.0.6 Bump softprops/action-gh-release from 2.0.5 to 2.0.6
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Merge pull request hyperspy#3385 from ericpre/support_nav_sig_axes_ke…
…yword Add support for `"sig"` and `"nav"` to index `axes_manager`
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Merge pull request hyperspy#3397 from ericpre/add_warning_banner_old_…
…documentation Add old version warning banner in documentation
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[pre-commit.ci] pre-commit autoupdate
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Merge pull request hyperspy#3398 from hyperspy/pre-commit-ci-update-c…
…onfig [pre-commit.ci] pre-commit autoupdate
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Merge pull request hyperspy#3386 from ericpre/fix_numpy2
Support numpy 2.0
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Update doc/user_guide/axes.rst
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Update doc/user_guide/axes.rst
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Update doc/user_guide/axes.rst
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[pre-commit.ci] auto fixes from pre-commit.com hooks
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Merge pull request hyperspy#2756 from francisco-dlp/NEW_TupleSA
Add ``set()`` and ``get`` methods to ``AxesManager``'s ``signal_axes`` and ``navigation_axes``
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Merge pull request hyperspy#3403 from ericpre/Release_2.1.1
Release 2.1.1
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Merge pull request hyperspy#3407 from ericpre/fix_rebin_nonuniform
Allow rebinning uniform axis of signal containing non-uniform axis
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Workaround for old version banner to play well with the stable versio…
…n being the last minor or patch release
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Bump robotology/gh-action-nightly-merge from 1.5.0 to 1.5.2
Bumps [robotology/gh-action-nightly-merge](https://github.com/robotology/gh-action-nightly-merge) from 1.5.0 to 1.5.2. - [Release notes](https://github.com/robotology/gh-action-nightly-merge/releases) - [Commits](robotology/gh-action-nightly-merge@14b4a4c...81570ba) --- updated-dependencies: - dependency-name: robotology/gh-action-nightly-merge dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Bump softprops/action-gh-release from 2.0.6 to 2.0.8
Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2.0.6 to 2.0.8. - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](softprops/action-gh-release@a74c6b7...c062e08) --- updated-dependencies: - dependency-name: softprops/action-gh-release dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]>
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Fix loading polynomial component saved with hyperspy <= 2.1.1. The `o…
…rder` initialisation parameter was not saved (missing from the whitelist)
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Fallback to module "numpy" module when loading expression based compo…
…nent saved with numexpr as module
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Merge pull request hyperspy#3411 from hyperspy/dependabot/github_acti…
…ons/RELEASE_next_patch/robotology/gh-action-nightly-merge-1.5.2 Bump robotology/gh-action-nightly-merge from 1.5.0 to 1.5.2
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Merge pull request hyperspy#3412 from hyperspy/dependabot/github_acti…
…ons/RELEASE_next_patch/softprops/action-gh-release-2.0.8 Bump softprops/action-gh-release from 2.0.6 to 2.0.8
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Merge pull request hyperspy#3413 from ericpre/fix_saving_polynomial
Fix loading polynomial saved with hyperspy <=2.1.1
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Merge pull request hyperspy#3400 from magnunor/add_fft_live_example
Add example: live FFT
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Merge pull request hyperspy#3409 from ericpre/fix_switcher_banner
Fix old version warning banner in the stable documentation
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Use
lock=False
indask.array.store
to avoid error with picking lo……ck when using the process scheduler
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Add option to silence warning when
BaseSignal.map
operates on signa……ls with non-uniform axes or differens scales, units for the signals axis
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Merge pull request hyperspy#3421 from ericpre/lock_dask_store
Fix non-lazy map with processes scheduler
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Disable snapping for non-uniform axis to avoid error when moving ROI …
…on non-uniform axes
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Merge pull request hyperspy#3418 from ericpre/snap_widget_non-uniform…
…_axis Disable snap to axes for non uniform axis
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Merge pull request hyperspy#3419 from ericpre/normalise_plot_spectra
Add parameter to normalise spectra in `hs.plot.plot_spectra`
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Add option to use numpy polynomial fit to estimate the
offset
and `……scale` in `convert_to_uniform_axis`
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Suggest to use
interpolate_on_axis
in rebin error message when rebi……nnig along non-uniform axis
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Remove numpy 2.0 build in the test matrix since it is now released an…
…d installed by default
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Co-authored-by: Jonas Lähnemann <[email protected]>
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Merge pull request hyperspy#3410 from ericpre/interpolation_on_axis_c…
…onvert_uniform Add support to convert to uniform axis in `interpolate_on_axis`
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Merge pull request hyperspy#3428 from ericpre/silence_warning_non-uni…
…form Silence unnecessary warnings when using non-uniform axis
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Fix failing test with scipy 1.15 dev - most likely due singular matri…
…x in the calculation of covariance?
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Merge pull request hyperspy#3420 from ericpre/improve_atomic_resoluti…
…on_image Improve `hs.data.atomic_resolution_image`
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Merge pull request hyperspy#3434 from ericpre/return_tupleSA_indexing…
…_AxesManager Consistently return `TupleSA` when indexing `AxesManager`
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Merge pull request hyperspy#3426 from ericpre/linear_optimizer_improv…
…ements Linear optimizer improvements
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Fix horizontal plotting with ipympl 0.9.4/ipython 8.24: ipympl backen…
…d changed name from `ipympl` to `widget`
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Merge pull request hyperspy#3435 from jlaehne/set-signal-doc
Update `set_signal_type` docstring
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Merge pull request hyperspy#3437 from ericpre/fix_horizontal_plotting…
…_ipympl Fix horizontal plotting with ipympl 0.9.4/ipython 8.24
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Fix passing
single_figure_kwargs
inhs.plot.plot_roi_map
when `hs…….plot.plot_spectra` is used
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Remove pop up
range_bins
parameter for lazy signal since dask suppo……rts it since 2.18.1
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Merge pull request hyperspy#3438 from ericpre/fix_interactive_normalise
Fix interactive normalise in `hs.plot.plot_spectra`
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Merge pull request hyperspy#3439 from ericpre/add_style_parameters_pr…
…int_known_signals Add style parameter to `print_known_signal_types`
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Improve wording docstring and fix formatting release note
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Merge pull request hyperspy#3422 from ericpre/fix_get_histogram
Various `get_histogram` fixes
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Require matplotlib 3.9 to use subfigure to be able to use interactive…
… backend - various issues fixed in matplotlib 3.9
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Merge pull request hyperspy#3343 from CSSFrancis/advanced_plotting_tools
New Feature: Add sub-figure plotting
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Fix typos and use figure handle instead of
pyplot
Co-authored-by: Carter Francis <[email protected]>
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Merge pull request hyperspy#3423 from ericpre/ax_parameters_plot
Add parameters to specify matplotlib axes in `hs.plot.plot_*`
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This tells type checkers like pyright that this project includes type hints and does not require a type stub for type elucidation
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