Update preprocessing.py (#402)

Ensure essential packages are not detached. Co-authored-by: Michaela Müller <[email protected]>
theislab · Aug 7, 2024 · 3d982c4 · 3d982c4
1 parent 9271d92
commit 3d982c4
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/scib/preprocessing.py b/scib/preprocessing.py
@@ -345,11 +345,11 @@ def normalize(
 
     # Free memory in R
     ro.r("rm(list=ls())")
-    ro.r("lapply(names(sessionInfo()$loadedOnly), require, character.only = TRUE)")
-    ro.r(
-        'invisible(lapply(paste0("package:", names(sessionInfo()$otherPkgs)), '
-        "detach, character.only=TRUE, unload=TRUE))"
-    )
+    # ro.r("lapply(names(sessionInfo()$loadedOnly), require, character.only = TRUE)")
+    # ro.r(
+    #     'invisible(lapply(paste0("package:", names(sessionInfo()$otherPkgs)), '
+    #     "detach, character.only=TRUE, unload=TRUE))"
+    # )
     ro.r("gc()")
 
     anndata2ri.deactivate()