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updates + fixed github actions
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ilibarra committed May 24, 2024
1 parent 965bf72 commit a296895
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14 changes: 0 additions & 14 deletions .github/workflows/pre-commit.yaml

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22 changes: 11 additions & 11 deletions .github/workflows/python-package.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -5,9 +5,9 @@ name: Python package

on:
push:
branches: [ "development", "main" ]
pull_request:
branches: [ "main" ]
branches: [ "development",] # "main" ]
# pull_request:
# branches: [ "main" ]

jobs:
build:
Expand All @@ -16,7 +16,7 @@ jobs:
strategy:
fail-fast: false
matrix:
python-version: ["3.9", "3.10", "3.11"]
python-version: ["3.9",] # "3.10", "3.11"]

steps:
- uses: actions/checkout@v4
Expand All @@ -28,13 +28,13 @@ jobs:
run: |
python -m pip install --upgrade pip
python -m pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
if [ -f pyproject.toml ]; then pip install . ; fi
# - name: Lint with flake8
# run: |
# # stop the build if there are Python syntax errors or undefined names
# flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
# flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with pytest
run: |
pytest
77 changes: 0 additions & 77 deletions .github/workflows/test.yaml

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4,665 changes: 3,798 additions & 867 deletions docs/notebooks/scatac/02_2_1_scatac_multiome_pancreas_priors_train.ipynb

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