pr #2233. Fixed missing tests for utils methods. #590
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # ----------------------------------------------------------------------------- | |
| # BSD 3-Clause License | |
| # | |
| # Copyright (c) 2023, Science and Technology Facilities Council. | |
| # All rights reserved. | |
| # | |
| # Redistribution and use in source and binary forms, with or without | |
| # modification, are permitted provided that the following conditions are met: | |
| # | |
| # * Redistributions of source code must retain the above copyright notice, this | |
| # list of conditions and the following disclaimer. | |
| # | |
| # * Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation | |
| # and/or other materials provided with the distribution. | |
| # | |
| # * Neither the name of the copyright holder nor the names of its | |
| # contributors may be used to endorse or promote products derived from | |
| # this software without specific prior written permission. | |
| # | |
| # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS | |
| # "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT | |
| # LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS | |
| # FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE | |
| # COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, | |
| # INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, | |
| # BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; | |
| # LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER | |
| # CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT | |
| # LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN | |
| # ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE | |
| # POSSIBILITY OF SUCH DAMAGE. | |
| # ----------------------------------------------------------------------------- | |
| # Author S. Siso, STFC Daresbury Lab | |
| # This workflow will use a self-hosted runner to perform the more expensive | |
| # integrations tests that are not run on GHA systems. | |
| name: NEMO Integration Tests | |
| on: | |
| push | |
| jobs: | |
| run_if_on_mirror: | |
| if: ${{ github.repository == 'stfc/PSyclone-mirror' }} | |
| runs-on: self-hosted | |
| env: | |
| PERL5LIB: /home/aporter/perl5/lib/perl5 | |
| PERL_LOCAL_LIB_ROOT: /home/aporter/perl5 | |
| PERL_MB_OPT: "--install_base \"/home/aporter/perl5\"" | |
| PERL_MM_OPT: "INSTALL_BASE=/home/aporter/perl5" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| # This is required to get the commit history for merge commits for | |
| # the ci-skip check below. | |
| fetch-depth: '0' | |
| - name: Check for [skip ci] in commit message | |
| uses: mstachniuk/ci-skip@v1 | |
| with: | |
| # This setting causes the tests to 'fail' if [skip ci] is specified | |
| fail-fast: true | |
| commit-filter: '[skip ci]' | |
| - name: Install dependencies | |
| run: | | |
| python -m venv .runner_venv | |
| . .runner_venv/bin/activate | |
| python -m pip install --upgrade pip | |
| # If you wish to install the version of fparser pointed to by the | |
| # submodule instead of the released version (from PyPI) then | |
| # uncomment the following line: | |
| pip install external/fparser | |
| pip install .[test] | |
| # Add Perl to the PATH | |
| echo "/home/aporter/perl5/bin" >> $GITHUB_PATH | |
| # Compile nvidia profiling tools | |
| module load nvidia-hpcsdk | |
| cd lib/profiling/nvidia/ | |
| F90=nvfortran make | |
| # PSyclone, compile and run MetOffice NEMO with OpenMP for GPUs | |
| - name: NEMO MetOffice OpenMP for GPU | |
| run: | | |
| . .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export NEMO_DIR=${HOME}/NEMO | |
| cd examples/nemo/scripts | |
| make -j 4 openmp_gpu | |
| module load nvidia-hpcsdk netcdf_fortran | |
| make -j 4 compile-openmp_gpu | |
| export NV_ACC_POOL_THRESHOLD=75 | |
| make run-openmp_gpu | tee output.txt | |
| # Check the output is as expected for the first 6 digits | |
| tail -n 1 output.txt | grep -q " it : 10" | |
| tail -n 1 output.txt | grep -q "|ssh|_max: 0.259483" | |
| tail -n 1 output.txt | grep -q "|U|_max: 0.458515" | |
| tail -n 1 output.txt | grep -q "S_min: 0.482686" | |
| tail -n 1 output.txt | grep -q "S_max: 0.407622" | |
| grep -A 1 "Elapsed Time" output.txt | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $(grep -A 1 "Elapsed Time" output.txt | head -n 2 | tail -n 1) >> ${NEMO_DIR}/performance_history_openmp_gpu | |
| # PSyclone, compile and run MetOffice NEMO with OpenACC kernels for GPUs | |
| - name: NEMO MetOffice OpenACC kernels for GPU | |
| run: | | |
| . .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export NEMO_DIR=${HOME}/NEMO | |
| cd examples/nemo/scripts | |
| make -j 4 openacc_kernels | |
| module load nvidia-hpcsdk netcdf_fortran | |
| COMPILER_ARCH=linux_nvidia_acc_gpu make -j 4 compile-openacc_kernels | |
| export NV_ACC_POOL_THRESHOLD=75 | |
| make run-openacc_kernels | tee output.txt | |
| # Check the output is as expected for the first 6 digits | |
| tail -n 1 output.txt | grep -q " it : 10" | |
| tail -n 1 output.txt | grep -q "|ssh|_max: 0.259483" | |
| tail -n 1 output.txt | grep -q "|U|_max: 0.458515" | |
| tail -n 1 output.txt | grep -q "S_min: 0.482686" | |
| tail -n 1 output.txt | grep -q "S_max: 0.407622" | |
| grep -A 1 "Elapsed Time" output.txt | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $(grep -A 1 "Elapsed Time" output.txt | head -n 2 | tail -n 1) >> ${NEMO_DIR}/performance_history_openacc_kernels_gpu | |
| # PSyclone, compile and run ECMWF NEMO with OpenMP for CPUs | |
| - name: NEMO ECMWF OpenMP for CPU | |
| run: | | |
| . .runner_venv/bin/activate | |
| export PSYCLONE_NEMO_DIR=${GITHUB_WORKSPACE}/examples/nemo/scripts | |
| export NEMO_DIR=${HOME}/NEMOGCM_V40 | |
| export COMPILER_ARCH=linux_intel | |
| export ADD_KEYS="IEEE_IS_NAN=ieee_is_nan key_nosignedzero" | |
| export DEL_KEYS="key_iomput" | |
| export MODEL_DIR=/archive/ssiso/ecmwf_eORCA1_GO8/ | |
| export NAMELISTS_DIR=${NEMO_DIR}/testscripts_V40/output/openmp_outer_V40_eORCA1_GO8_Z75_20170906_cray_dp_1x1/ | |
| cd examples/nemo/scripts | |
| make -j 4 openmp_cpu | |
| module load intel/oneapi compiler mpi | |
| export LD_LIBRARY_PATH=/home/ssiso/ecmwf_nemo/ESiWACE2/scripts/dev/netcdf-c-4.9.0/lib/:$LD_LIBRARY_PATH | |
| export LD_LIBRARY_PATH=/home/ssiso/ecmwf_nemo/ESiWACE2/scripts/dev/netcdf-fortran-4.5.4/lib:$LD_LIBRARY_PATH | |
| export LD_LIBRARY_PATH=/home/ssiso/ecmwf_nemo/ESiWACE2/scripts/dev/hdf5-1.12.2/lib/:$LD_LIBRARY_PATH | |
| make -j 4 compile-openmp_cpu | |
| export OMP_NUM_THREADS=4 | |
| make run-openmp_cpu | tee output.txt | |
| # Check the output is as expected for the first 6 digits | |
| tail -n 1 output.txt | grep -q " it : 10" | |
| tail -n 1 output.txt | grep -q "|ssh|_max: 0.199714" | |
| tail -n 1 output.txt | grep -q "|U|_max: 0.148409" | |
| tail -n 1 output.txt | grep -q "S_min: 0.108530" | |
| tail -n 1 output.txt | grep -q "S_max: 0.404045" | |
| grep -A 1 "Elapsed Time" output.txt | |
| echo $GITHUB_REF_NAME $GITHUB_SHA $(grep -A 1 "Elapsed Time" output.txt | head -n 2 | tail -n 1) >> ${NEMO_DIR}/performance_history_openmp_cpu |