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setup.py
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setup.py
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import setuptools
with open("README.md", "r") as fh:
long_description = fh.read()
setuptools.setup(
name="bioanalyse",
version="0.0.1.dev1",
author="SC van Nostrand",
author_email="[email protected]",
description="Handles scRNAseq processing from a count matrix to clustering and visualization",
long_description=long_description,
long_description_content_type="text/markdown",
# url="https://github.com/pypa/sampleproject",
license='GPLv3',
classifiers=[
"Development Status :: 3 - Alpha"
"Intended Audience :: Science/Research"
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3",
"License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
"Operating System :: OS Independent",
"Topic :: Scientific/Engineering :: Bio-Informatics"
],
keywords='scrna biology compbio rnaseq scrnaseq processing',
python_requires='~=3.6',
packages=['bioanalyse'],
package_data={'bioanalyse':['HK_homo.csv', 'HK_mouse.csv']},
install_requires=['numpy', 'scipy', 'matplotlib', 'pandas', 'sklearn', 'mpl_toolkits', 'umap', 'frozendict', 'igraph'],
)