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Protein localization and protein-protein interaction visualization tool developed in JavaScript

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sacdallago/cellmap

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CellMap

Protein Localization and Protein-Protein Interaction (PPI) visualization tool.

Live example:

cellmap.protein.properties

Prerequisites:

To install locally, you must have an instance of MongoDB running and data for proteins formatted in the correct way (see data folder).

Fill up database

You can fill the database with the publicly available data by running npm run build:database. This command will load the data from data/data.json.

Cite

Dallago C, Goldberg T, Andrade-Navarro MA et al. CellMap visualizes protein-protein interactions and subcellular localization [version 2; peer review: 2 approved].
F1000Research 2018, 6:1824 (https://doi.org/10.12688/f1000research.12707.2)

Link to the manuscript: https://doi.org/10.12688/f1000research.12707.2