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check pre-commit code checks and formatters via precommit-ci-lite bot
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name: Check code | ||
on: | ||
pull_request: | ||
branches: [main] | ||
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permissions: | ||
contents: write | ||
pull-requests: write | ||
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jobs: | ||
main: | ||
runs-on: ubuntu-22.04 | ||
steps: | ||
- uses: actions/checkout@v4 | ||
- uses: actions/setup-python@v4 | ||
with: | ||
python-version: 3.x | ||
- uses: pre-commit/[email protected] | ||
- uses: pre-commit-ci/[email protected] | ||
name: pre-commit-ci-lite | ||
if: always() | ||
with: | ||
msg: apply code formatting | ||
env: | ||
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} |
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# All available hooks: https://pre-commit.com/hooks.html | ||
# R specific hooks: https://github.com/lorenzwalthert/precommit | ||
repos: | ||
- repo: https://github.com/lorenzwalthert/precommit | ||
rev: v0.4.3 | ||
hooks: | ||
- id: style-files | ||
args: [--style_pkg=styler, --style_fun=tidyverse_style, --cache-root=styler-perm] | ||
exclude: > | ||
(?x)^( | ||
tests/testthat/in/.*| | ||
renv/.* | ||
)$ | ||
- id: roxygenize | ||
additional_dependencies: | ||
- cli | ||
- fs | ||
- here | ||
- magrittr | ||
- purrr | ||
- R.cache | ||
- rlang | ||
- rprojroot | ||
- rstudioapi | ||
- withr | ||
- yaml | ||
- r-lib/pkgapi | ||
# codemeta must be above use-tidy-description when both are used | ||
# - id: codemeta-description-updated | ||
- id: use-tidy-description | ||
- id: spell-check | ||
exclude: > | ||
(?x)^( | ||
.*\.[rR]| | ||
.*\.feather| | ||
.*\.jpeg| | ||
.*\.pdf| | ||
.*\.png| | ||
.*\.py| | ||
.*\.RData| | ||
.*\.rds| | ||
.*\.Rds| | ||
.*\.Rproj| | ||
.*\.sh| | ||
(.*/|)\.gitignore| | ||
(.*/|)\.pre-commit-.*| | ||
(.*/|)\.Rbuildignore| | ||
(.*/|)\.Renviron| | ||
(.*/|)\.Rprofile| | ||
(.*/|)\.travis\.yml| | ||
(.*/|)appveyor\.yml| | ||
(.*/|)NAMESPACE| | ||
(.*/|)renv/settings\.dcf| | ||
(.*/|)renv\.lock| | ||
(.*/|)WORDLIST| | ||
\.github/workflows/.*| | ||
LICENSE| | ||
revdep/.*| | ||
tests/testthat/in/.*| | ||
)$ | ||
- id: readme-rmd-rendered | ||
- id: parsable-R | ||
exclude: > | ||
(?x)^( | ||
tests/testthat/in/.*| | ||
)$ | ||
- id: no-browser-statement | ||
exclude: > | ||
(?x)^( | ||
tests/testthat/in/.*| | ||
)$ | ||
- id: no-debug-statement | ||
exclude: > | ||
(?x)^( | ||
tests/testthat/in/.*| | ||
)$ | ||
- id: deps-in-desc | ||
- id: pkgdown | ||
- repo: https://github.com/pre-commit/pre-commit-hooks | ||
rev: v4.6.0 | ||
hooks: | ||
- id: check-added-large-files | ||
- id: end-of-file-fixer | ||
exclude: '\.Rd' # sometimes roxygen fails to generate EOF blank line. | ||
- id: file-contents-sorter | ||
files: '^\.Rbuildignore$' | ||
- repo: https://github.com/pre-commit-ci/pre-commit-ci-config | ||
rev: v1.6.1 | ||
hooks: | ||
# Only required when https://pre-commit.ci is used for config validation | ||
- id: check-pre-commit-ci-config | ||
- repo: https://github.com/lorenzwalthert/gitignore-tidy | ||
rev: 0.1.2 | ||
hooks: | ||
- id: tidy-gitignore | ||
- repo: local | ||
hooks: | ||
- id: consistent-release-tag | ||
name: consistent-release-tag | ||
entry: Rscript inst/hooks/local/consistent-release-tag.R | ||
language: r | ||
additional_dependencies: | ||
- docopt | ||
- fs | ||
- yaml | ||
- purrr | ||
- glue | ||
- rlang | ||
- git2r | ||
- desc | ||
- lorenzwalthert/precommit | ||
stages: [commit, push] | ||
- id: hooks-config-to-inst | ||
name: hooks-config-to-inst | ||
entry: Rscript inst/hooks/local/hooks-config-to-inst.R | ||
language: r | ||
stages: [commit, push] | ||
additional_dependencies: | ||
- fs | ||
require_serial: True | ||
- id: spell-check-exclude-identical | ||
name: spell-check-exclude-identical | ||
entry: Rscript inst/hooks/local/spell-check-exclude-identical.R | ||
language: r | ||
stages: [commit, push] | ||
additional_dependencies: | ||
- magrittr | ||
- purrr | ||
- yaml | ||
- here | ||
- rlang | ||
require_serial: True | ||
- id: forbid-to-commit | ||
name: Don't commit common R artifacts | ||
entry: Cannot commit .Rhistory, .Rdata, .csv and similar. | ||
language: fail | ||
files: '\.(Rhistory|csv|RData|Rds|rds)$' | ||
# `exclude: <regex>` to allow committing specific files. | ||
- id: spell-check-ordered-exclude | ||
name: Ordered regex pattern for spell-check exclusion | ||
description: Ensure alphabetical order in `exclude:` key of spell check. | ||
entry: Rscript inst/hooks/local/spell-check-ordered-exclude.R | ||
language: r | ||
files: '^(.*/|)\.?pre-commit-config.*\.yaml$' | ||
additional_dependencies: | ||
- magrittr | ||
- yaml | ||
- purrr | ||
- rlang | ||
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default_stages: ["commit"] | ||
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ci: | ||
skip: [consistent-release-tag, spell-check-ordered-exclude, pkgdown] | ||
autoupdate_schedule: monthly |